Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9898 217 2e-51 seq9943 98.7 1e-15 seq11381 86.0 7e-12 >seq9898 Length=4754808 Score = 217 bits (240), Expect = 2e-51 Identities = 934/1447 (65%), Gaps = 46/1447 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| ||||| | || || | || || || || |||||| | | | Sbjct 99898 CCACAGCACATGCTCATGAGAGTAGCTGTTGGAATCCACAAAACTGATATTGATGCAGCC 99957 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | | || ||||| ||| || | || || || || Sbjct 99958 ATTGAGACCTACAACCTGCTGTCTGAGAAGTG-GTTCACTCATGCCTCTCCCACTCTGTT 100016 Query 104341 CAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 |||||| || |||||| |||| || | || ||||||||||| | |||| ||||| Sbjct 100017 CAATGCAGG--CACCAACAGACCACAGCTCTCTAGTTGCTTCCTGCTGGCCATGAAGGAT 100074 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | || || |||| || || | | || || | ||||| || | || Sbjct 100075 GACAGCATTGATGGCATTTATGATACACTCAAACAATGCGCTCTCATCTCCAAATCTGCA 100134 Query 104459 GGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCA-ATAAATCTCGTATTCGGGGGA 104516 || || ||||| | ||| | || | ||| | | | || || ||| || | Sbjct 100135 GGAGGGATTGGTGTAGCAGTTAGCTGCATT-AGATCAACAGGAAGCTAC-ATTGCTGGAA 100192 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 |||||||| | ||| |||| || | |||||||| | || | ||| ||| ||||||| Sbjct 100193 CAAATGGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTACAACAACACGGCGCGCT 100252 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | |||| ||| | ||| || | | || | || ||||||||||||| Sbjct 100253 ACGTGGACCAAGGTGGCAATAAACGACCTGGTGCCTTTGCCATGTACCTTGAGCCATGGC 100312 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || || | | || ||||||||||| ||| ||| | |||||| | || Sbjct 100313 ACTTTGACGTGTTTGACTTCCTTGAGTTAAAGAAGAACACTGGTAAAGAGGAGCAGAGGG 100372 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 || || ||||||| || || ||||| || ||| | ||||||||||| || || | | Sbjct 100373 CACGAGACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGAAAACA 100432 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCC-AGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| | | || || || | || ||||| || || || | ||| Sbjct 100433 ACCAGGACTGGTCTTTGATGTGCCCCAGTGAGTGC-CCTGGGCTGGATGAGTGTTGGGGG 100491 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 ||||||||||| || ||||| |||||| | ||||| | | || | ||| Sbjct 100492 -GAGGAGTTTGAGAAGCTGTACACTCGCTACGAGCAGGAAGGCAGAGTGAAACGGGTGGT 100550 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 ||| | |||||| | || || | ||||||| || || || || || || || Sbjct 100551 CAAGGCTCAGCAGGTGTGGTATGCCATCATAGAGTCTCAGACTGAAACAGGAACTCCTTA 100610 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||| | |||||||| ||||||||| ||||||||||| |||||||||| ||||| Sbjct 100611 CATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAATCAGCAGAATTTGGGCACTATCAA 100670 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 | || | || || || || |||| | |||| |||||||||| || || || Sbjct 100671 ATGCAGTAACTTGTGCACTGAGATTGTGGAGTATACAAGCAAAGATGAGGTAGCCGTCTG 100730 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 105111 |||| | || || || ||||| || |||||| |||||| | ||| ||||| | Sbjct 100731 TAACTTGGCTTCTATTGCTCTTAACATGTATGTTACTCCAGA---ACGGACCTTTGACTT 100787 Query 105112 TGAAAAACTCCACGAAGTTACGAA---AACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 |||| || | || || || || ||| | |||||| |||| | ||||| Sbjct 100788 CAAAAAGCTTGCCTCTGTCACTAAAGTAATTGT---AAGAAACCTCAACAAGATCATTGA 100844 Query 105169 TAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 | || | ||||| || ||| || || || || | | | ||| | ||||| Sbjct 100845 CATTAACTACTACCCAGTCCCTGA---AGCCGAGAACTCGAACAAGCGCCACAGGCCAAT 100901 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG--AT 105283 || | || || ||||||||||| |||| |||||||| || | |||||| | Sbjct 100902 CGGAATTGGAGTGCAGGGTCTCGCAGATGCCTTCATTCTCATGCGTTATCCATTTGAAAG 100961 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 ||| ||||| || | || | || |||||||| || || ||||||| || Sbjct 100962 TCC--TGAAGCCCAGCTGCTGAACATCCAGATCTTTGAGACAATATACTACGCCGCCCTG 101019 Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 ||||| || | ||||| ||||| || || || ||||| || | ||||||||| Sbjct 101020 GAGGCAAGCTGCGAGTTAGCAGAAAAAGACGGGCCTTATGAGACATACCCAGGTTCTCCA 101079 Query 105404 GCTTCACAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTG-AGACCAAGCTTCACTA 105459 | | ||||| | || |||| || |||||| ||||||| ||| ||| || Sbjct 101080 G-TGAGTAAGGGCATTCTGCAATACGACATGTGGGAGAAGGTGCCGACTGCGCT---CTG 101135 Query 105460 CGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 |||| ||||||| || ||||| || | | | ||| | | ||||| || | Sbjct 101136 GGACT-GGAAGCTGCTTAAGGAGAAGATTACTAAACATGGTGTGAGGAACAGCCTGTTGT 101194 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 |||| || ||||| || || ||||| |||||||| | || || ||||| | | | ||| Sbjct 101195 TGGCCCCCATGCCTACTGCTTCCACAGCACAAATACTAGGCAACAATGAGTCCATCGAAG 101254 Query 105579 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 105638 ||||||| | |||||||| | ||| |||| | ||||||||| |||||| ||| Sbjct 101255 CCTACACCAGCAACATCTACACACGCAGAGTCCTCTCCGGAGAGTTTCAGATTGTAAACC 101314 Query 105639 AGCATCT 105645 ||||| Sbjct 101315 CACATCT 101321 >seq9943 Length=499256 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| |||||||||||||| |||||| ||| |||| ||||||||||| ||||| Sbjct 291969 TGTCGAGGGGATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCTGGCTCAAGAAACGAGG 292028 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 || ||||| || || |||||||||||| || ||| | ||||||| ||| Sbjct 292029 CCTGATGCCCGGACTGACCTTCTCCAACGAACTCATCAGCAGAGACGAGGTACT 292082 >seq11381 Length=12543884 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/110 (80%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCT 94874 |||||||| ||| ||||| || ||||||||||| ||||| ||| || ||||||||||| Sbjct 9286870 GCATTTGCAGCTGTAGAGGGAATTTTCTTCTCTGGATCCTT-TGCGGCCATTTATTGGCT 9286928 Query 94875 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT-CTCCAACGAGCTTATC 94923 || ||| | ||||| ||||| ||||| | ||| ||||| || |||||| Sbjct 9286929 GAAAAAGAGGGGTCTAATGCCCGGTCT-TACTTATTCCAATGAACTTATC 9286977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583139627568800