Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9898 154 2e-32 seq9943 89.7 6e-13 seq11714 82.4 8e-11 >seq9898 Length=4754808 Score = 154 bits (170), Expect = 2e-32 Identities = 514/790 (65%), Gaps = 16/790 (2%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||| || ||||| ||| || ||| | | ||| | || || |||||| Sbjct 100742 GAAGCCAAGTTACAGACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCAC 100683 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || ||| | ||||| ||||| | |||| ||| || |||||| ||||||||| || Sbjct 100682 AAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCT 100623 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||||| ||||||| || || || || ||| |||| || | | | | | ||| | Sbjct 100622 TTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACACC 100563 Query 79237 TCCCGGGCCCGGACAACC---TTCT-TGTACCGACCCTGTGCGACGTACGTCCGGTACAA 79292 | | | ||| ||| ||| ||| | | || || ||| |||| ||||| Sbjct 100562 TGCTGAGCCTTGACCACCCGTTTCACTCTGCCTTCC---TGCT-CGTAGCGAGTGTACAG 100507 Query 79293 CTCGTTGAAAGCCTCCCCATAGACA-TCGGGCAGGCCCGGGCACTCGTGCGGGCACATCA 79351 || | || ||||||| | ||| || ||| || |||||||| |||||||||| Sbjct 100506 CTTCTCAAACTCCTCCCCCCA-ACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCA 100448 Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCG 79411 |||||||| || || || ||| ||| |||||| | || |||||||| ||||| Sbjct 100447 AAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCAT 100388 Query 79412 TGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGT 79471 ||||||||| || | | |||||| | || |||| | ||| || |||| Sbjct 100387 AGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGT 100328 Query 79472 CCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGC 79531 | | | ||| |||||| ||||| || || ||||| || | ||| || || || Sbjct 100327 CAAACACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGC 100268 Query 79532 CGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGT 79591 | || |||| ||||| || |||||||||||| | || | ||||| ||||| | ||| | Sbjct 100267 CACCTTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCAT 100208 Query 79592 CGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGC--AGTG 79649 | || || || || || | || | | | |||| ||| | || Sbjct 100207 TTGAATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATG---CAGCTAACTG 100151 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 | || || || || | | ||||||||| | ||||| | ||||| || || || | Sbjct 100150 CTACACCAATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAA 100091 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 |||| || || ||| |||||||| || | ||||||||| || || | |||||| ||| Sbjct 100090 TGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGT 100031 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 | || || || ||||| || || || | || || ||||| |||| | || ||| | Sbjct 100030 TGGTGCCTGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGT 99971 Query 79829 CGTACGTCTC 79838 ||| ||||| Sbjct 99970 TGTAGGTCTC 99961 Score = 141 bits (156), Expect = 1e-28 Identities = 344/518 (66%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| || || | || || || ||||| Sbjct 99961 GAGACCTACAACCTGCTGTCTGAGAAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAAT 100020 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || |||| || ||| | || || || ||||| |||| ||||||||||||||| Sbjct 100021 GCAGGCACCAACAGACCACAGCTCTCTAGTTGCTTCCTGCTGGCCATGAAGGATGACAGC 100080 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||||| ||||| || || || ||||| | ||||| | ||||||||| | | || || Sbjct 100081 ATTGATGGCATTTATGATACACTCAAACAATGCGCTCTCATCTCCAAATCTGCAGGAGGG 100140 Query 19346 ATCGG-GATCCACT--GCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 || || | || | ||| | || | || | || | || ||| || || Sbjct 100141 ATTGGTGTAGCAGTTAGCTGCATTA---GATCAACAGGAAGCTACATTGCTGGAACAAAT 100197 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 || | | || | || |||||||| | || | |||||||||||| | ||||| Sbjct 100198 GGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTACAACAACACGGCGCGCTACGTG 100257 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 |||| || ||| ||||| || | || ||||| ||||| |||||||||||| Sbjct 100258 GACCAAGGTGGCAATAAACGACCTGGTGCCTTTGCCATGTACCTTGAGCCATGGCACTTT 100317 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582 ||||| | || ||||| || | |||| ||| | |||||| | | || Sbjct 100318 GACGTGTTTGACTTCCTTGAGTTAAAGAAGAACACTGGTAAAGAGGAGCAGAGGGCACGA 100377 Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642 ||||||||| ||| | ||||| || || | |||||| ||| ||| || || || | Sbjct 100378 GACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGAAAACAACCAG 100437 Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 || ||| |||||||||| || |||||||| || Sbjct 100438 GACTGGTCTTTGATGTGCCCCAGTGAGTGCCCTGGGCT 100475 >seq9943 Length=499256 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || || || |||||||||||||| || ||| || |||||||||||||| || || ||| Sbjct 291970 GTCGAGGGGATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCTGGCTCAAGAAACGAGGC 292029 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| || |||| ||||||||||| || || | | ||||||| Sbjct 292030 CTGATGCCCGGACTGACCTTCTCCAACGAACTCATCAGCAGAGACGAGG 292078 >seq11714 Length=3826745 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 || |||||||| |||| |||||||||||||||||||||||||| ||||| || | ||| Sbjct 1503018 AGTTGTTTCCTTTTGGCCATGAAGGATGACAGCATTGAGGGCATTTACGACACCTTGAAG 1502959 Query 19313 GAGTGCGCGCACATCTCCAA 19332 |||| || | |||||| || Sbjct 1502958 CAGTGTGCTCTCATCTCTAA 1502939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548410843972800