Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq9898 154 2e-32
seq9943 89.7 6e-13
seq11714 82.4 8e-11
>seq9898
Length=4754808
Score = 154 bits (170), Expect = 2e-32
Identities = 514/790 (65%), Gaps = 16/790 (2%)
Strand=Plus/Minus
Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116
|| |||| ||| || ||||| ||| || ||| | | ||| | || || ||||||
Sbjct 100742 GAAGCCAAGTTACAGACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCAC 100683
Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176
|| ||| | ||||| ||||| | |||| ||| || |||||| ||||||||| ||
Sbjct 100682 AAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCT 100623
Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236
||||| ||||||| || || || || ||| |||| || | | | | | ||| |
Sbjct 100622 TTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACACC 100563
Query 79237 TCCCGGGCCCGGACAACC---TTCT-TGTACCGACCCTGTGCGACGTACGTCCGGTACAA 79292
| | | ||| ||| ||| ||| | | || || ||| |||| |||||
Sbjct 100562 TGCTGAGCCTTGACCACCCGTTTCACTCTGCCTTCC---TGCT-CGTAGCGAGTGTACAG 100507
Query 79293 CTCGTTGAAAGCCTCCCCATAGACA-TCGGGCAGGCCCGGGCACTCGTGCGGGCACATCA 79351
|| | || ||||||| | ||| || ||| || |||||||| ||||||||||
Sbjct 100506 CTTCTCAAACTCCTCCCCCCA-ACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCA 100448
Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCG 79411
|||||||| || || || ||| ||| |||||| | || |||||||| |||||
Sbjct 100447 AAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCAT 100388
Query 79412 TGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGT 79471
||||||||| || | | |||||| | || |||| | ||| || ||||
Sbjct 100387 AGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGT 100328
Query 79472 CCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGC 79531
| | | ||| |||||| ||||| || || ||||| || | ||| || || ||
Sbjct 100327 CAAACACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGC 100268
Query 79532 CGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGT 79591
| || |||| ||||| || |||||||||||| | || | ||||| ||||| | ||| |
Sbjct 100267 CACCTTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCAT 100208
Query 79592 CGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGC--AGTG 79649
| || || || || || | || | | | |||| ||| | ||
Sbjct 100207 TTGAATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATG---CAGCTAACTG 100151
Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708
| || || || || | | ||||||||| | ||||| | ||||| || || || |
Sbjct 100150 CTACACCAATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAA 100091
Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768
|||| || || ||| |||||||| || | ||||||||| || || | |||||| |||
Sbjct 100090 TGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGT 100031
Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828
| || || || ||||| || || || | || || ||||| |||| | || ||| |
Sbjct 100030 TGGTGCCTGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGT 99971
Query 79829 CGTACGTCTC 79838
||| |||||
Sbjct 99970 TGTAGGTCTC 99961
Score = 141 bits (156), Expect = 1e-28
Identities = 344/518 (66%), Gaps = 6/518 (1%)
Strand=Plus/Plus
Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225
||||| ||| ||||| || |||||| ||||| || || | || || || |||||
Sbjct 99961 GAGACCTACAACCTGCTGTCTGAGAAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAAT 100020
Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285
|| || || |||| || ||| | || || || ||||| |||| |||||||||||||||
Sbjct 100021 GCAGGCACCAACAGACCACAGCTCTCTAGTTGCTTCCTGCTGGCCATGAAGGATGACAGC 100080
Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345
||||| ||||| || || || ||||| | ||||| | ||||||||| | | || ||
Sbjct 100081 ATTGATGGCATTTATGATACACTCAAACAATGCGCTCTCATCTCCAAATCTGCAGGAGGG 100140
Query 19346 ATCGG-GATCCACT--GCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402
|| || | || | ||| | || | || | || | || ||| || ||
Sbjct 100141 ATTGGTGTAGCAGTTAGCTGCATTA---GATCAACAGGAAGCTACATTGCTGGAACAAAT 100197
Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462
|| | | || | || |||||||| | || | |||||||||||| | |||||
Sbjct 100198 GGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTACAACAACACGGCGCGCTACGTG 100257
Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522
|||| || ||| ||||| || | || ||||| ||||| ||||||||||||
Sbjct 100258 GACCAAGGTGGCAATAAACGACCTGGTGCCTTTGCCATGTACCTTGAGCCATGGCACTTT 100317
Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582
||||| | || ||||| || | |||| ||| | |||||| | | ||
Sbjct 100318 GACGTGTTTGACTTCCTTGAGTTAAAGAAGAACACTGGTAAAGAGGAGCAGAGGGCACGA 100377
Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642
||||||||| ||| | ||||| || || | |||||| ||| ||| || || || |
Sbjct 100378 GACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGAAAACAACCAG 100437
Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680
|| ||| |||||||||| || |||||||| ||
Sbjct 100438 GACTGGTCTTTGATGTGCCCCAGTGAGTGCCCTGGGCT 100475
>seq9943
Length=499256
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062
|| || || |||||||||||||| || ||| || |||||||||||||| || || |||
Sbjct 291970 GTCGAGGGGATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCTGGCTCAAGAAACGAGGC 292029
Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111
|| ||||| || |||| ||||||||||| || || | | |||||||
Sbjct 292030 CTGATGCCCGGACTGACCTTCTCCAACGAACTCATCAGCAGAGACGAGG 292078
>seq11714
Length=3826745
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312
|| |||||||| |||| |||||||||||||||||||||||||| ||||| || | |||
Sbjct 1503018 AGTTGTTTCCTTTTGGCCATGAAGGATGACAGCATTGAGGGCATTTACGACACCTTGAAG 1502959
Query 19313 GAGTGCGCGCACATCTCCAA 19332
|||| || | |||||| ||
Sbjct 1502958 CAGTGTGCTCTCATCTCTAA 1502939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548410843972800
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