Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9898 122 1e-22 seq4440 100 3e-16 seq8713 89.7 6e-13 >seq9898 Length=4754808 Score = 122 bits (134), Expect = 1e-22 Identities = 460/709 (65%), Gaps = 16/709 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || || ||| | || || |||||||| || || || || || ||| | Sbjct 99985 AAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAATGCAGGCACCAACAGACCACAGCTC 100044 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || ||||||||| |||| |||||||||||| || || ||||| || || || ||| Sbjct 100045 TCTAGTTGCTTCCTGCTGGCCATGAAGGATGACAGCATTGATGGCATTTATGATACACTC 100104 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACT--GCTCGAAC 53443 || | || || | ||||||||| | | || || || ||| | || | ||| | Sbjct 100105 AAACAATGCGCTCTCATCTCCAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCT---GC 100161 Query 53444 GTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502 | | | ||| | | | | || || || || || | |||| | ||||| Sbjct 100162 ATTAGATC-AACAGGAAGCTACATTGCTGGAACAAATGGTAATTCAAATGGCCTTGTGCC 100220 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 ||||| | || | |||||||||||| || ||||| |||| ||||| || || Sbjct 100221 AATGCTGAGGGTGTACAACAACACGGCGCGCTACGTGGACCAAGGTGGCAATAAACGACC 100280 Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 || | || ||||| ||||| ||||| |||||| ||| | | || || || ||| | Sbjct 100281 TGGTGCCTTTGCCATGTACCTTGAGCCATGGCACTTTGACGTGTTTGACTTCCTTGAGTT 100340 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGAT 53682 ||| ||| | || ||| | | || ||||| || || || ||||| Sbjct 100341 AAAGAAGAACACTGGTAAAGAGGAGCAGAGGGCACGAGACCTCTTCTATGCCCTATGGAT 100400 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 || || | |||||| | | |||||| || || |||| |||| |||||||||| | Sbjct 100401 CCCTGATTTGTTCATGAAGAGGGTGGAAAACAACCAGGACTGGTCTTTGATGTGCCCCAG 100460 Query 53743 CGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG- 53800 |||||||| || || | | |||| | || ||||||||| | || |||| | || Sbjct 100461 TGAGTGCCCTGGGCTGGATGAGTGT-TGGGGGGAGGAGTTTGAGAAGCTGTA-CACTCGC 100518 Query 53801 TAC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAA 53858 ||| |||| | ||| | || | ||||||||| | |||| ||| |||| | Sbjct 100519 TACGAGCAG--GAAGGCAGAGTGAAACGGGTGGTCAAGGCTCAGCAGGTGTGGTATGCCA 100576 Query 53859 TCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACG 53918 || | || ||| || || ||||| || ||||||| ||||| ||| | ||| Sbjct 100577 TCATAGAGTCTCAGACTGAAACAGGAACTCCTTACATGTTGTACAAAGATGCCTGTAACA 100636 Query 53919 AGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 |||||| || ||| |||| | ||| ||||||| || ||||| || Sbjct 100637 GGAAGAGTAATCAGCAGAATTTGGGCACTATCAAATGCAGTAACTTGTG 100685 >seq4440 Length=1539330 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| ||||| ||||| || | || || |||||||| Sbjct 1267504 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 1267563 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| |||| ||| | |||||| ||||||||| ||||||||||| |||||| Sbjct 1267564 CCCAGGGGCTGCAGGATGTTTATGTTGTTACTGCCCACGAAGTTCTGAGCCAAGTTCACA 1267623 Query 152149 ATCGT 152153 || || Sbjct 1267624 ATGGT 1267628 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| |||||||| ||||| ||| | || ||||| || || Sbjct 1267504 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 1267563 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||| | |||||| |||||| ||||| ||||||||||| ||| Sbjct 1267564 CCCAGGGGCTGCAGGATGTTTATGTTGTTACTGCCCACGAAGTTCTGAGCCAAGTTCACA 1267623 Query 117425 ATCGT 117429 || || Sbjct 1267624 ATGGT 1267628 >seq8713 Length=5607630 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| ||| |||| |||||||||||| || || ||||| || || Sbjct 1701123 AGTGAAAATATATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAGCCGAGTACCAAACTG 1701064 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| |||| ||| || |||| ||||||| ||| ||||| || |||||||| Sbjct 1701063 ACCAAGAGGCTGCAAAAGATTCAAGTTGTTGCTGCCAACAAAATTCTGAGCCAA 1701010 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || ||||| | |||||| | ||||||||||| |||||| || |||||||| Sbjct 1701122 GTGAAAATATATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAGCCGAGTACCAAACTGA 1701063 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| | || || | ||||||| ||| || ||||||||||||||| ||| Sbjct 1701062 CCAAGAGGCTGCAAAAGATTCAAGTTGTTGCTGCCAACAAAATTCTGAGCCAAACCAACA 1701003 Query 152149 ATCGT 152153 || || Sbjct 1701002 ATGGT 1700998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547102315876000