Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq9898 122 1e-22
seq4440 100 3e-16
seq8713 89.7 6e-13
>seq9898
Length=4754808
Score = 122 bits (134), Expect = 1e-22
Identities = 460/709 (65%), Gaps = 16/709 (2%)
Strand=Plus/Plus
Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326
|||| || || || ||| | || || |||||||| || || || || || ||| |
Sbjct 99985 AAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAATGCAGGCACCAACAGACCACAGCTC 100044
Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386
|| || ||||||||| |||| |||||||||||| || || ||||| || || || |||
Sbjct 100045 TCTAGTTGCTTCCTGCTGGCCATGAAGGATGACAGCATTGATGGCATTTATGATACACTC 100104
Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACT--GCTCGAAC 53443
|| | || || | ||||||||| | | || || || ||| | || | ||| |
Sbjct 100105 AAACAATGCGCTCTCATCTCCAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCT---GC 100161
Query 53444 GTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502
| | | ||| | | | | || || || || || | |||| | |||||
Sbjct 100162 ATTAGATC-AACAGGAAGCTACATTGCTGGAACAAATGGTAATTCAAATGGCCTTGTGCC 100220
Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562
||||| | || | |||||||||||| || ||||| |||| ||||| || ||
Sbjct 100221 AATGCTGAGGGTGTACAACAACACGGCGCGCTACGTGGACCAAGGTGGCAATAAACGACC 100280
Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622
|| | || ||||| ||||| ||||| |||||| ||| | | || || || ||| |
Sbjct 100281 TGGTGCCTTTGCCATGTACCTTGAGCCATGGCACTTTGACGTGTTTGACTTCCTTGAGTT 100340
Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGAT 53682
||| ||| | || ||| | | || ||||| || || || |||||
Sbjct 100341 AAAGAAGAACACTGGTAAAGAGGAGCAGAGGGCACGAGACCTCTTCTATGCCCTATGGAT 100400
Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742
|| || | |||||| | | |||||| || || |||| |||| |||||||||| |
Sbjct 100401 CCCTGATTTGTTCATGAAGAGGGTGGAAAACAACCAGGACTGGTCTTTGATGTGCCCCAG 100460
Query 53743 CGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG- 53800
|||||||| || || | | |||| | || ||||||||| | || |||| | ||
Sbjct 100461 TGAGTGCCCTGGGCTGGATGAGTGT-TGGGGGGAGGAGTTTGAGAAGCTGTA-CACTCGC 100518
Query 53801 TAC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAA 53858
||| |||| | ||| | || | ||||||||| | |||| ||| |||| |
Sbjct 100519 TACGAGCAG--GAAGGCAGAGTGAAACGGGTGGTCAAGGCTCAGCAGGTGTGGTATGCCA 100576
Query 53859 TCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACG 53918
|| | || ||| || || ||||| || ||||||| ||||| ||| | |||
Sbjct 100577 TCATAGAGTCTCAGACTGAAACAGGAACTCCTTACATGTTGTACAAAGATGCCTGTAACA 100636
Query 53919 AGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967
|||||| || ||| |||| | ||| ||||||| || ||||| ||
Sbjct 100637 GGAAGAGTAATCAGCAGAATTTGGGCACTATCAAATGCAGTAACTTGTG 100685
>seq4440
Length=1539330
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||||||||| |||| |||||| ||||| ||||| || | || || ||||||||
Sbjct 1267504 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 1267563
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| ||||| |||| ||| | |||||| ||||||||| ||||||||||| ||||||
Sbjct 1267564 CCCAGGGGCTGCAGGATGTTTATGTTGTTACTGCCCACGAAGTTCTGAGCCAAGTTCACA 1267623
Query 152149 ATCGT 152153
|| ||
Sbjct 1267624 ATGGT 1267628
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||| | ||| |||||||| ||||| ||| | || ||||| || ||
Sbjct 1267504 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 1267563
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| |||| || || ||| | |||||| |||||| ||||| ||||||||||| |||
Sbjct 1267564 CCCAGGGGCTGCAGGATGTTTATGTTGTTACTGCCCACGAAGTTCTGAGCCAAGTTCACA 1267623
Query 117425 ATCGT 117429
|| ||
Sbjct 1267624 ATGGT 1267628
>seq8713
Length=5607630
Score = 89.7 bits (98), Expect = 6e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363
||||||||| || |||| ||| |||| |||||||||||| || || ||||| || ||
Sbjct 1701123 AGTGAAAATATATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAGCCGAGTACCAAACTG 1701064
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417
||| |||| ||| || |||| ||||||| ||| ||||| || ||||||||
Sbjct 1701063 ACCAAGAGGCTGCAAAAGATTCAAGTTGTTGCTGCCAACAAAATTCTGAGCCAA 1701010
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || ||||| | |||||| | ||||||||||| |||||| || ||||||||
Sbjct 1701122 GTGAAAATATATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAGCCGAGTACCAAACTGA 1701063
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| | || || | ||||||| ||| || ||||||||||||||| |||
Sbjct 1701062 CCAAGAGGCTGCAAAAGATTCAAGTTGTTGCTGCCAACAAAATTCTGAGCCAAACCAACA 1701003
Query 152149 ATCGT 152153
|| ||
Sbjct 1701002 ATGGT 1700998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547102315876000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |