Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10290 217 2e-51 seq11085 143 3e-29 seq4440 84.2 2e-11 >seq10290 Length=4455921 Score = 217 bits (240), Expect = 2e-51 Identities = 186/230 (81%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||||||||||||||| || |||||||| |||||||| |||||||||||| | Sbjct 2172853 ATCATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACTATTACCCTTGAGGTTGAGCCC 2172912 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| | ||||| ||| |||| ||||| |||||||||||||| || ||||| ||||| Sbjct 2172913 AGTGACACCATTGAAAACGTGAAAGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGAT 2172972 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || | || ||||||||||| ||||| || ||||||| |||||||| | ||||| Sbjct 2172973 CAACAAAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTCTCCGACTAC 2173032 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| || |||||||||||||| ||||| |||| || | ||||| Sbjct 2173033 AACATCCAGAAAGAATCCACTCTTCACTTAGTCCTGCGCCTCAGAGGTGG 2173082 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || ||||| || || || |||||||| ||| | | Sbjct 2170709 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCCAGC 2170768 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || |||||||||||||| || ||||| ||||| ||| Sbjct 2170769 GACACGATTGAAAATGTTAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 2170828 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| || ||||||| || ||||| | ||||| || Sbjct 2170829 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGACTACAAC 2170888 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || ||||| ||| ||||||| | ||||| Sbjct 2170889 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2170935 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || ||||| ||||| ||| | || Sbjct 2171165 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 2171224 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 2171225 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 2171284 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| || || |||| || ||||| | ||||| ||| Sbjct 2171285 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATGGGCGCACCCTCTCCGACTACAAT 2171344 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||||||||| ||||| || ||||| ||| ||||||| | ||||| || Sbjct 2171345 ATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGCCA 2171394 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || ||| | ||||| ||| | | Sbjct 2170937 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTTTGGAGGTGGAGCCCAGC 2170996 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || |||||||||||||| || ||||| ||||| ||| Sbjct 2170997 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 2171056 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || |||||||| || ||||| ||||| || | || || || | ||||| || Sbjct 2171057 CAGAGGCTGATTTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACTCTGTCTGACTACAAC 2171116 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || |||||||| || ||||| ||| ||||||| | ||||| Sbjct 2171117 ATTCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2171163 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || ||||| ||||| ||| | || Sbjct 2173084 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 2173143 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 2173144 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 2173203 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| ||||| || | ||||| || | ||||| || Sbjct 2173204 CAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGTACTCTGTCTGACTACAAC 2173263 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || |||||||| |||||||| || | ||||| | ||||| || Sbjct 2173264 ATCCAGAAAGAATCCACCCTTCATCTTGTTCTTCGTCTCAGGGGTGGCCA 2173313 >seq11085 Length=328877 Score = 143 bits (158), Expect = 3e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| ||||||||||||| || |||| || || || || | |||| || || Sbjct 147840 TAAAATGCAG-TCTTTGTCAAGACCCTGACCGAAAAAAC-ATCACGTTGCAGGTGGAATC 147897 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 |||| | ||||| |||| | ||||| || || |||| ||| || | |||||||| || Sbjct 147898 TAGTGACACCATTGAAAATGTTAAGGCAAAGATCCAGGGCAAAGAAGATATTCCTCCTGA 147957 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||||| | || ||||||||||||||||| || || || | || |||||| ||||||| Sbjct 147958 CCAGCAGAGACTGATTTTTGCTGGTAAGCAGCTTGAAGACGGTCATACCCTCTCAGACTA 148017 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCAT 27609 || | || ||||||||||| || ||| Sbjct 148018 CAACATGCAGAAGGAATCCACCCTCCAT 148045 >seq4440 Length=1539330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | ||||||||||| || || || ||| | ||| | || |||| Sbjct 1267628 ACCATTGTGAACTTGGCTCAGAACTTCGTGGGCAGTAACAACATAAACATCCTGCAGCCC 1267569 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 || |||||||| || || || || ||||| |||||||| ||| ||||||||||| Sbjct 1267568 CTGGGTCAGTTTGGTACTCGCATCAATGGAGGCAAAGATGCTGCCAGCCCCCGTTACATC 1267509 Query 32245 TTCACC 32250 |||||| Sbjct 1267508 TTCACC 1267503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570191918014400