Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq13501 123 3e-23 seq1 91.5 2e-13 >seq13501 Length=12216461 Score = 123 bits (136), Expect = 3e-23 Identities = 125/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 32669 AGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCAT 32728 ||||||||||| || ||| |||| |||||||| ||||| || || || | || ||||| Sbjct 6011652 AGCCTTGTGGTGGTACTTTGTCTCCAAAGGTATTGAATACCTGGACACAGTGTTTTTCAT 6011593 Query 32729 AATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTT 32788 |||| || || || ||||| || | ||| ||||| || |||||||| | |||||||| Sbjct 6011592 TCTGAGGAAAAAGTTCAACCAGGTGACCTTCTTGCATGTGTACCACCACTGCACCATGTT 6011533 Query 32789 TACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 ||| | | ||||| || || |||||| | |||||||||||| Sbjct 6011532 CACTCTGTGGTGGATTGGCATCAAATGGGTGGCAGGAGGACAG 6011490 >seq1 Length=17765049 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 32688 ATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGAGAAAGAAATTTAAC 32747 ||||||||||| | || | | | || ||| | || ||||| |||| || || || ||| Sbjct 7548964 ATCTCTAAAGGAGTGGAGTTTTTGGACACTGTATTTTTCATTTTGAGGAAAAAGTTCAAC 7548905 Query 32748 CAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTTTAGGATGGATAGGG 32807 ||||| || ||||| ||||| ||||| || | |||||||| | || | ||||| || Sbjct 7548904 CAAGTCAGTTTTTTACACGTCTACCATCACTGCACCATGTTCATCTTGTGGTGGATTGGC 7548845 Query 32808 ATTAAATGGTTTGCAGGAGGACAGG 32832 || |||||| | | |||||||||| Sbjct 7548844 ATCAAATGGGTCCCCGGAGGACAGG 7548820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603055489188800