Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq12570 122 8e-23
>seq12570
Length=3236859
Score = 122 bits (134), Expect = 8e-23
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|||||||||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct 1219284 TACTCCGCCCCAAAGTGTCTCCACTGAAAGCCATAAACCGGCCCAAGGTCTCCCTCCTCT 1219343
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
|| | ||||| | ||||||||| ||||| ||||| || | |||||||| ||||||
Sbjct 1219344 CGGTCAGTAAACCCACCCTTGTCCAGGAAGTCACGAGAACCATTGGCGTCCCAAATCTTC 1219403
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043
||||| | |||||||| ||||
Sbjct 1219404 ACCCCTTTTGCAGAGAGCTCTTTGG 1219428
Score = 122 bits (134), Expect = 8e-23
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
|||| |||||||| | ||||||||||| |||||||| | || ||||| ||||| |
Sbjct 1219428 CCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGACGCCAATGGTTCTCGTGACTTCC 1219369
Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421
|||||||| | ||||| | || |||||||| ||| | || ||||| || || || |
Sbjct 1219368 TGGACAAGGGTGGGTTTACTGACCGAGAGGAGGGAGACCTTGGGCCGGTTTATGGCTTTC 1219309
Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446
|||||||||||||||||||||||||
Sbjct 1219308 AGTGGAGACACTTTGGGGCGGAGTA 1219284
Score = 109 bits (120), Expect = 5e-19
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| || || || || || || ||||| ||||| || || || | |||
Sbjct 1218825 TGGGCGATCATGTATGTTAGAAGTGCATAGCTGGCAATATTGAAAGGTACTCCCAGACCC 1218884
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||| || || || ||||| ||||||||||||||||| |||| || ||||| ||
Sbjct 1218885 ATGTCACCAGAGCGCTGATAAAGCTGGCAGGACAGCTCGCCATCACACACATAGAACTGA 1218944
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGG 6774
|| || | |||||| || || || ||||| || ||
Sbjct 1218945 CAAAGAGCGTGGCATGGAGGCAGAGCCATAAGTGG 1218979
Score = 109 bits (120), Expect = 5e-19
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 34571 CCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAG 34630
|| || ||||| || || || |||||| | || || || ||||| || |||| |||
Sbjct 1218979 CCACTTATGGCTCTGCCTCCATGCCACGCTCTTTGTCAGTTCTATGTGTGTGATGGCGAG 1218920
Query 34631 CTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATT 34690
|||||||||||||| ||||| || || || |||||||| | || || || ||||| |||
Sbjct 1218919 CTGTCCTGCCAGCTTTATCAGCGCTCTGGTGACATGGGTCTGGGAGTACCTTTCAATATT 1218860
Query 34691 GCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
|| || || || || || || ||||||||||| ||
Sbjct 1218859 GCCAGCTATGCACTTCTAACATACATGATCGCCCA 1218825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448169273486400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |