Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq12570 122 8e-23 >seq12570 Length=3236859 Score = 122 bits (134), Expect = 8e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 |||||||||||||||||||||||||| || || || ||||| || | ||| |||||||| Sbjct 1219284 TACTCCGCCCCAAAGTGTCTCCACTGAAAGCCATAAACCGGCCCAAGGTCTCCCTCCTCT 1219343 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | ||||| | ||||||||| ||||| ||||| || | |||||||| |||||| Sbjct 1219344 CGGTCAGTAAACCCACCCTTGTCCAGGAAGTCACGAGAACCATTGGCGTCCCAAATCTTC 1219403 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 ||||| | |||||||| |||| Sbjct 1219404 ACCCCTTTTGCAGAGAGCTCTTTGG 1219428 Score = 122 bits (134), Expect = 8e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||||||||||| |||||||| | || ||||| ||||| | Sbjct 1219428 CCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGACGCCAATGGTTCTCGTGACTTCC 1219369 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||||||| | ||||| | || |||||||| ||| | || ||||| || || || | Sbjct 1219368 TGGACAAGGGTGGGTTTACTGACCGAGAGGAGGGAGACCTTGGGCCGGTTTATGGCTTTC 1219309 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||||||||||||||||||||| Sbjct 1219308 AGTGGAGACACTTTGGGGCGGAGTA 1219284 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || || || || || || ||||| ||||| || || || | ||| Sbjct 1218825 TGGGCGATCATGTATGTTAGAAGTGCATAGCTGGCAATATTGAAAGGTACTCCCAGACCC 1218884 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || || ||||| ||||||||||||||||| |||| || ||||| || Sbjct 1218885 ATGTCACCAGAGCGCTGATAAAGCTGGCAGGACAGCTCGCCATCACACACATAGAACTGA 1218944 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGG 6774 || || | |||||| || || || ||||| || || Sbjct 1218945 CAAAGAGCGTGGCATGGAGGCAGAGCCATAAGTGG 1218979 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 34571 CCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAG 34630 || || ||||| || || || |||||| | || || || ||||| || |||| ||| Sbjct 1218979 CCACTTATGGCTCTGCCTCCATGCCACGCTCTTTGTCAGTTCTATGTGTGTGATGGCGAG 1218920 Query 34631 CTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATT 34690 |||||||||||||| ||||| || || || |||||||| | || || || ||||| ||| Sbjct 1218919 CTGTCCTGCCAGCTTTATCAGCGCTCTGGTGACATGGGTCTGGGAGTACCTTTCAATATT 1218860 Query 34691 GCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || || || || ||||||||||| || Sbjct 1218859 GCCAGCTATGCACTTCTAACATACATGATCGCCCA 1218825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448169273486400