Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq12570 91.5 1e-13 seq2 86.0 5e-12 >seq12570 Length=3236859 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTG--TAGCTGGCTACATTAAAAG 118591 || ||||| | ||| || ||||||||||| | || || |||||||| | ||| |||| Sbjct 1218813 AGTCCTGTGATGTGGGCGATCATGTATGTTA--GAAGTGCATAGCTGGCAATATTGAAAG 1218870 Query 118592 GAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTG 118651 | || |||||||||||||| | || | ||| || | ||||| || ||||| || | Sbjct 1218871 GTACTCCCAGACCCATGTCACCAGAGCGCTGATAAAGCTGGCAGGACAGCTCGCCATCAC 1218930 Query 118652 CAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||||| | ||| |||||||||||| |||| Sbjct 1218931 ACACATAGAACTGACAAAGAGCGTGGCATGGAGGCAGAGCCAT 1218973 >seq2 Length=8690502 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/143 (74%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 ||| | || || || ||||| ||||| || ||||||||| | ||| |||| || |||||| Sbjct 3544972 GTTATAGACGAACTGTTCCGCGATGGAGTGAACTGGGGGAGGATTATTGCGTTTTTTGAG 3544913 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCG--TCAATAGAGG-CATACCCTCCCTCGTTGAC 3361 |||||||| |||| ||||| ||| || | ||||| ||| | |||| || ||| Sbjct 3544912 TTTGGTGGAACCGTGTGCGTGGAGTGCGCATCCAAAGAGGACATGTCATCCCAAGTGGAC 3544853 Query 3362 AACATTGCCGCGTGGATGACAGA 3384 ||||| || | |||||||| || Sbjct 3544852 AACATCGCAGACTGGATGACGGA 3544830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414392845133680