Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq12570 91.5 1e-13
seq2 86.0 5e-12
>seq12570
Length=3236859
Score = 91.5 bits (100), Expect = 1e-13
Identities = 119/163 (73%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTG--TAGCTGGCTACATTAAAAG 118591
|| ||||| | ||| || ||||||||||| | || || |||||||| | ||| ||||
Sbjct 1218813 AGTCCTGTGATGTGGGCGATCATGTATGTTA--GAAGTGCATAGCTGGCAATATTGAAAG 1218870
Query 118592 GAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTG 118651
| || |||||||||||||| | || | ||| || | ||||| || ||||| || |
Sbjct 1218871 GTACTCCCAGACCCATGTCACCAGAGCGCTGATAAAGCTGGCAGGACAGCTCGCCATCAC 1218930
Query 118652 CAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||| ||||||| | ||| |||||||||||| ||||
Sbjct 1218931 ACACATAGAACTGACAAAGAGCGTGGCATGGAGGCAGAGCCAT 1218973
>seq2
Length=8690502
Score = 86.0 bits (94), Expect = 5e-12
Identities = 106/143 (74%), Gaps = 3/143 (2%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
||| | || || || ||||| ||||| || ||||||||| | ||| |||| || ||||||
Sbjct 3544972 GTTATAGACGAACTGTTCCGCGATGGAGTGAACTGGGGGAGGATTATTGCGTTTTTTGAG 3544913
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCG--TCAATAGAGG-CATACCCTCCCTCGTTGAC 3361
|||||||| |||| ||||| ||| || | ||||| ||| | |||| || |||
Sbjct 3544912 TTTGGTGGAACCGTGTGCGTGGAGTGCGCATCCAAAGAGGACATGTCATCCCAAGTGGAC 3544853
Query 3362 AACATTGCCGCGTGGATGACAGA 3384
||||| || | |||||||| ||
Sbjct 3544852 AACATCGCAGACTGGATGACGGA 3544830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414392845133680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |