Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10290 176 1e-38 seq11085 114 3e-20 seq16311 89.7 1e-12 seq8928 89.7 1e-12 >seq10290 Length=4455921 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||||||||| ||||| |||||||| || || | ||||| | ||||| Sbjct 2173067 AGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCC 2173008 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || || ||||| | |||||| || || |||| |||||||||||| Sbjct 2173007 TCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTTGTCC 2172948 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||||||| ||||||||| | |||||||| || || || || Sbjct 2172947 TGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTT 2172888 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | ||||| Sbjct 2172887 TTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2172856 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| |||||||| || || || | ||||| | |||||| Sbjct 2171376 AGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATCT 2171317 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | | || || || || |||| |||||||||||| Sbjct 2171316 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2171257 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || ||||| |||||||| ||| Sbjct 2171256 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 2171197 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 2171196 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2171165 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||| ||||| |||||||| || || | || || | || ||| Sbjct 2173295 AGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCT 2173236 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | | || || || || |||| |||||||||||| Sbjct 2173235 TCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2173176 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || ||||| |||||||| ||| Sbjct 2173175 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 2173116 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 2173115 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2173084 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||| |||||||| || || | ||||| | ||||| Sbjct 2170920 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCC 2170861 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | | || || || || |||| |||||||||||| Sbjct 2170860 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2170801 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| || ||||| | || ||||| || ||||| || Sbjct 2170800 TGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTT 2170741 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | |||||| || Sbjct 2170740 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 2170706 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||| || ||||| || || | || || | || ||| Sbjct 2171148 AGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCGTCT 2171089 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || || || || | || || || || |||| |||||||||||| Sbjct 2171088 TCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2171029 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || |||||||| | || ||||| | |||||| ||| Sbjct 2171028 TGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATGGTC 2170969 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 2170968 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937 >seq11085 Length=328877 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || || ||||| || || | ||||| || ||||| |||||| Sbjct 148044 TGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGAGAGGGTATGACCGTCTTCAAGCTGC 147985 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || || | || ||||||||||||| |||| ||| ||||||||||| Sbjct 147984 TTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGAATATCTTCTTTGCCCTGGATCTTT 147925 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| ||||||||| ||| |||| | ||||| || ||| | || Sbjct 147924 GCCTTAACATTTTCAATGGTGTCACTAGATTCCACCTGCAACGTGAT-GTTTTTTCGGTC 147866 Query 211092 AGAGTCTTTACAAACACCTGCATTTTA 211118 || ||||| ||||| | |||||||||| Sbjct 147865 AGGGTCTTGACAAAGA-CTGCATTTTA 147840 >seq16311 Length=87806 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||| ||||||||||| ||||| || ||||||||||| | || |||||| Sbjct 5307 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 5248 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| |||||||||||||| || || | |||||| || Sbjct 5247 AGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCATGTT 5201 >seq8928 Length=738707 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||| ||||||| | || ||| ||||||||| |||||| Sbjct 514104 GGGAGAGGAGGACAGTCTGCTCTTCGTTTTGCTCGTCTGAGAATGGAAAAGAGACACAAC 514163 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG---TGTTTTATCAAAGACAACAAGTGT 139938 || |||| ||||| || || | ||| | ||| | | || ||| |||| |||| | Sbjct 514164 TATGTGAGGAAAGTGGCTGAAACAGCAGTGCAGCTCTTTGTTTCCAATGACA--AAGT-T 514220 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 |||| | || || || |||| || || || || ||||| || ||||| | ||| Sbjct 514221 AATGTTGCAGGAATGGTCCTGGCTGGATCTGCTGATTTCAAAACTGAGCTCAGCCAGTCT 514280 Query 139999 GACTTTTTTGACCC 140012 ||| | ||||| || Sbjct 514281 GACATGTTTGATCC 514294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158905165826300