Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 176 1e-38
seq11085 114 3e-20
seq16311 89.7 1e-12
seq8928 89.7 1e-12
>seq10290
Length=4455921
Score = 176 bits (194), Expect = 1e-38
Identities = 166/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | |||||||||||| ||||| |||||||| || || | ||||| | |||||
Sbjct 2173067 AGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCC 2173008
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || || ||||| | |||||| || || |||| ||||||||||||
Sbjct 2173007 TCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTTGTCC 2172948
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| |||||||||||| ||||||||| | |||||||| || || || ||
Sbjct 2172947 TGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTT 2172888
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| ||||| | |||||
Sbjct 2172887 TTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2172856
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || |||||||| |||||||| || || || | ||||| | ||||||
Sbjct 2171376 AGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATCT 2171317
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| | | || || || || |||| ||||||||||||
Sbjct 2171316 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2171257
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||||| |||||||||||| | || ||||| |||||||| |||
Sbjct 2171256 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 2171197
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || ||||| | ||||||
Sbjct 2171196 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2171165
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| ||||| ||||| ||||| |||||||| || || | || || | || |||
Sbjct 2173295 AGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCT 2173236
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| | | || || || || |||| ||||||||||||
Sbjct 2173235 TCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2173176
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||||| |||||||||||| | || ||||| |||||||| |||
Sbjct 2173175 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 2173116
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || ||||| | ||||||
Sbjct 2173115 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2173084
Score = 136 bits (150), Expect = 9e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || ||||| ||||| |||||||| || || | ||||| | |||||
Sbjct 2170920 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCC 2170861
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| | | || || || || |||| ||||||||||||
Sbjct 2170860 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2170801
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || ||||| || ||||| | || ||||| || ||||| ||
Sbjct 2170800 TGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTT 2170741
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| || || ||||| | |||||| ||
Sbjct 2170740 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 2170706
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || ||||| ||||| || ||||| || || | || || | || |||
Sbjct 2171148 AGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCGTCT 2171089
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || || || || | || || || || |||| ||||||||||||
Sbjct 2171088 TCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2171029
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || || |||||||| | || ||||| | |||||| |||
Sbjct 2171028 TGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATGGTC 2170969
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || ||||| | ||||||
Sbjct 2170968 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937
>seq11085
Length=328877
Score = 114 bits (126), Expect = 3e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || ||||| || || || ||||| || || | ||||| || ||||| ||||||
Sbjct 148044 TGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGAGAGGGTATGACCGTCTTCAAGCTGC 147985
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || || || || | || ||||||||||||| |||| ||| |||||||||||
Sbjct 147984 TTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGAATATCTTCTTTGCCCTGGATCTTT 147925
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| || ||||| ||||||||| ||| |||| | ||||| || ||| | ||
Sbjct 147924 GCCTTAACATTTTCAATGGTGTCACTAGATTCCACCTGCAACGTGAT-GTTTTTTCGGTC 147866
Query 211092 AGAGTCTTTACAAACACCTGCATTTTA 211118
|| ||||| ||||| | ||||||||||
Sbjct 147865 AGGGTCTTGACAAAGA-CTGCATTTTA 147840
>seq16311
Length=87806
Score = 89.7 bits (98), Expect = 1e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|| ||||| ||||||||||| ||||| || ||||||||||| | || ||||||
Sbjct 5307 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 5248
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||||| ||||| |||||||||||||| || || | |||||| ||
Sbjct 5247 AGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCATGTT 5201
>seq8928
Length=738707
Score = 89.7 bits (98), Expect = 1e-12
Identities = 138/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881
|| ||||||||||| |||||||| ||||||| | || ||| ||||||||| ||||||
Sbjct 514104 GGGAGAGGAGGACAGTCTGCTCTTCGTTTTGCTCGTCTGAGAATGGAAAAGAGACACAAC 514163
Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG---TGTTTTATCAAAGACAACAAGTGT 139938
|| |||| ||||| || || | ||| | ||| | | || ||| |||| |||| |
Sbjct 514164 TATGTGAGGAAAGTGGCTGAAACAGCAGTGCAGCTCTTTGTTTCCAATGACA--AAGT-T 514220
Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998
|||| | || || || |||| || || || || ||||| || ||||| | |||
Sbjct 514221 AATGTTGCAGGAATGGTCCTGGCTGGATCTGCTGATTTCAAAACTGAGCTCAGCCAGTCT 514280
Query 139999 GACTTTTTTGACCC 140012
||| | ||||| ||
Sbjct 514281 GACATGTTTGATCC 514294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158905165826300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |