Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq10290 136 9e-27 seq16620 118 3e-21 >seq10290 Length=4455921 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||| || ||||||| |||||| |||| | || | |||||| Sbjct 2171377 CAGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATC 2171318 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| | | || || || || ||||| ||||||||||| Sbjct 2171317 TTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 2171258 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | ||||| || Sbjct 2171257 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 2171198 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| || || | ||||| Sbjct 2171197 CTTCCCAGTGAGGGTTTT 2171180 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| || | ||||| || | || ||| | || || Sbjct 2171149 CAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCGTC 2171090 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || || || || | || || || || ||||| ||||||||||| Sbjct 2171089 TTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 2171030 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||||| ||||||| || |||||||| || ||||| || || ||||| || Sbjct 2171029 CTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATGGT 2170970 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| || || | ||||| Sbjct 2170969 CTTCCCAGTGAGGGTTTT 2170952 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| |||||||||||||| |||| ||||| |||| | || | |||||| Sbjct 2173068 CAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATC 2173009 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||| || ||||| | |||||| || || ||||| ||||||||||| Sbjct 2173008 CTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTTGTC 2172949 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||||| ||||| ||| |||||||| || || || || | || || || Sbjct 2172948 CTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGT 2172889 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | || | |||||| Sbjct 2172888 TTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2172856 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || ||||||||||| |||| ||||| || | || ||| | || ||| Sbjct 2173295 AGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCT 2173236 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| | | || || || || ||||| ||||||||||| Sbjct 2173235 TCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2173176 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 2173175 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 2173116 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || | ||||| Sbjct 2173115 TTCCCAGTGAGGGTTTT 2173099 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| |||| ||||| || | | || | ||||| Sbjct 2170921 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 2170862 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || || ||||| | | || || || || ||||| ||||||||||| Sbjct 2170861 CTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 2170802 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||||| ||| ||| ||| || ||||| || ||||| || | ||||| || Sbjct 2170801 CTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTGATGGT 2170742 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | ||||| | || | ||||| || Sbjct 2170741 TTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 2170706 >seq16620 Length=17111 Score = 118 bits (130), Expect = 3e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 ||||| || ||| |||| || ||||||||||| || ||||||||| | || || || || Sbjct 5630 TACAATGTAATTGTTACAGCTCATGCCTTTGTAATAATTTTCTTTATAGTAATACCTGTC 5689 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 ||||| || || || ||||| ||| | || ||| |||||||||| || || || ||||| Sbjct 5690 ATGATTGGAGGATTTGGAAACTGACTAGTACCTCTAATGATTGGAGCCCCCGACATGGCC 5749 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||||| | | || || || || |||||| |||| || || || || |||| Sbjct 5750 TTTCCTCGAATAAATAACATGAGCTTTTGACTACTCCCTCCCTCATTCCTTCT 5802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192277257934280