Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 136 9e-27
seq16620 118 3e-21
>seq10290
Length=4455921
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| ||||| || ||||||| |||||| |||| | || | ||||||
Sbjct 2171377 CAGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATC 2171318
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || ||||| | | || || || || ||||| |||||||||||
Sbjct 2171317 TTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 2171258
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| |||||| ||||||||||| || ||||| || | ||||| ||
Sbjct 2171257 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 2171198
Query 225681 CTTGCCCGTCAAAGTTTT 225698
||| || || | |||||
Sbjct 2171197 CTTCCCAGTGAGGGTTTT 2171180
Score = 127 bits (140), Expect = 5e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| ||||||||||| || | ||||| || | || ||| | || ||
Sbjct 2171149 CAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCGTC 2171090
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || || || || | || || || || ||||| |||||||||||
Sbjct 2171089 TTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 2171030
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|| ||||| ||||||| || |||||||| || ||||| || || ||||| ||
Sbjct 2171029 CTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATGGT 2170970
Query 225681 CTTGCCCGTCAAAGTTTT 225698
||| || || | |||||
Sbjct 2170969 CTTCCCAGTGAGGGTTTT 2170952
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| | ||| |||||||||||||| |||| ||||| |||| | || | ||||||
Sbjct 2173068 CAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATC 2173009
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
|| |||||||| ||||| || ||||| | |||||| || || ||||| |||||||||||
Sbjct 2173008 CTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTTGTC 2172949
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|| ||||| ||||| ||| |||||||| || || || || | || || ||
Sbjct 2172948 CTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGT 2172889
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | || | ||||||
Sbjct 2172888 TTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2172856
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||| || || ||||||||||| |||| ||||| || | || ||| | || |||
Sbjct 2173295 AGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCT 2173236
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| | | || || || || ||||| |||||||||||
Sbjct 2173235 TCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2173176
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| ||||||||||| || ||||| || | ||||| |||
Sbjct 2173175 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 2173116
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || || | |||||
Sbjct 2173115 TTCCCAGTGAGGGTTTT 2173099
Score = 114 bits (126), Expect = 3e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| ||||||||||| |||| ||||| || | | || | |||||
Sbjct 2170921 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 2170862
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
|| |||||||| || || ||||| | | || || || || ||||| |||||||||||
Sbjct 2170861 CTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 2170802
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|| ||||| ||| ||| ||| || ||||| || ||||| || | ||||| ||
Sbjct 2170801 CTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTGATGGT 2170742
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || | ||||| | || | ||||| ||
Sbjct 2170741 TTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 2170706
>seq16620
Length=17111
Score = 118 bits (130), Expect = 3e-21
Identities = 130/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617
||||| || ||| |||| || ||||||||||| || ||||||||| | || || || ||
Sbjct 5630 TACAATGTAATTGTTACAGCTCATGCCTTTGTAATAATTTTCTTTATAGTAATACCTGTC 5689
Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677
||||| || || || ||||| ||| | || ||| |||||||||| || || || |||||
Sbjct 5690 ATGATTGGAGGATTTGGAAACTGACTAGTACCTCTAATGATTGGAGCCCCCGACATGGCC 5749
Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730
||||| | | || || || || |||||| |||| || || || || ||||
Sbjct 5750 TTTCCTCGAATAAATAACATGAGCTTTTGACTACTCCCTCCCTCATTCCTTCT 5802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192277257934280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |