Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9898 682 0.0 seq11714 132 7e-26 seq11381 102 1e-16 >seq9898 Length=4754808 Score = 682 bits (756), Expect = 0.0 Identities = 1339/1965 (68%), Gaps = 27/1965 (1%) Strand=Plus/Minus Query 77059 TATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGAT 77118 ||||||| || || |||||||||| | || || || | | | || ||||| || | Sbjct 101371 TATTCTTCATTTCCTCATTCCACAGTCCCCGTTCAGTCAGGTCCTTGAGCAGATGTGGGT 101312 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | || || ||||| ||||| || | ||||| || ||||| || || ||||| || | || Sbjct 101311 TTACAATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTT 101252 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | || |||||||| || | ||||| || || |||||||| ||||| || |||| || Sbjct 101251 CGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATGGGGGCCAACA 101192 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 | | || || || | ||||||| | | || || || || || ||||| ||||| | Sbjct 101191 ACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGA 101132 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATC 77358 | | | || || ||||| | |||||||| ||||| || ||||| | || | Sbjct 101131 GCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCCCTTACTCACTGGAGAAC 101072 Query 77359 CATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTC 77418 | ||||| |||||||| || ||| |||| |||| || || || || |||| || Sbjct 101071 CTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCCTCCAGGGCGG 101012 Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACG 77478 |||| || ||||| || || |||| | || || || |||||| ||| ||||| | Sbjct 101011 CGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCTTCAGGACTTTCAAATG 100952 Query 77479 GATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 ||||| | | ||||| ||||||||||| | ||||| |||||||| || || || || | Sbjct 100951 GATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCGATTGGCCTGT 100892 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | ||| || || | | ||||| || | || || || |||||||| || || || | Sbjct 100891 GGCGCTTGTTCGAGTTCTCGGCTTCAGGGACTGGGTAGTAGTTAATGTCAATGATCTTGT 100832 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT 77658 |||| ||||| |||| ||||||| || || || || ||||| | | | Sbjct 100831 TGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAGCTTTTTGAAGTCAAAGGTCCGTT 100772 Query 77659 CTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715 || ||||| ||||||| | ||| ||||| || | ||||| || |||||||||| Sbjct 100771 CTGGAGTAACATACATGTTAAGAGCAATAGAAGCCAAGTTACAGACGGCTACCTCATCTT 100712 Query 77716 CGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 | | | ||| | | ||||| || || | ||||| |||||||||||||||| ||| | Sbjct 100711 TGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATAGTGCCCAAATTCT 100652 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 | || || ||||| | || || | || || || | || | ||||| || |||||| Sbjct 100651 GCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTTTCAG 100592 Query 77836 TCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATCATAGATTTGTATC- 77892 |||| || || || || | | ||| || || || ||| || | || ||| || Sbjct 100591 TCTGAGACTCTATGATGGCATACCACAC--CTGCTGAGCCTTGACCACCCGTTTCACTCT 100534 Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA 77952 |||| || | | || |||| || ||| ||||| || || |||||| ||||||| Sbjct 100533 GCCTTCCTGCT-CGTAGCGAGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCA 100475 Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 |||||||| ||| | ||||||||||| |||||||| | | | || | |||| Sbjct 100474 GCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCA 100415 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 | || | |||||| |||||||| ||| || || ||||| | || || || || || | Sbjct 100414 TGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTAC 100355 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | || ||||| || | || || || || | | ||| | |||||||| || || || | Sbjct 100354 CAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCATGGCTCAAGGTACA 100295 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 | || | | |||||||||||||| || || || || | || | || ||||| || | Sbjct 100294 TGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGCGCGCCGTGTTGTTGT 100235 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 | || |||| |||||| | || || || || | ||||||||||||| ||| || |||| Sbjct 100234 ACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCCAGCAATGTAGCTTC 100175 Query 78253 CACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 | ||| | ||| |||| | || || || |||||||| || || || |||| Sbjct 100174 CTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGATTTGGAGATGAGAG 100115 Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372 |||| |||| | |||||| || || || || || ||||||||| ||||| || || | Sbjct 100114 CGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGA 100055 Query 78373 AACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 | || ||||| | || || || || |||||||| || | || ||||| ||| Sbjct 100054 AGCAACTAGAGAGCTGTGGTCTGTTG----GTGCCTGCATTGAACAGAGTGGGAGAGGCA 99999 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 || || ||||| || ||||| || || ||||| || ||||| |||| || || || | Sbjct 99998 TGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCAATATCAGTT 99939 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 | || ||||| || ||||| | ||| | ||| ||||| || | ||| || ||| | Sbjct 99938 TTGTGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGGACGCTCAGCCACCTTGCCA 99879 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || ||||||| || ||| || || | || ||||| ||||| | || || ||||| Sbjct 99878 TTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTTAAAGCCAAAGAAATTATAAGAAAAA 99819 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTA--ACAATATCCA 78666 || || || || || ||| |||| || || |||||| |||| | |||||||| | Sbjct 99818 TCCCTATCATAGATTATAGCAGAGTTGAGGCGGTCTTTG--TTTGCAAGGACAATATCTA 99761 Query 78667 -TGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTT--AGGATTAACATAGTTAA 78723 | | | | || || || || || || | | ||| ||| || |||||||| | Sbjct 99760 GGGTCTCTTG-GGAGATCATGGGGGA--GTGGCGCTTGTTTAAAGGGTTGACATAGTTGA 99704 Query 78724 ATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAG 78783 | | ||| ||||| || ||||| || | || || || || || || || || || |||| Sbjct 99703 ACAGATCCTCCATGACGTCACTGAACACCTTCTTGGTCTCTTTATGGAGGTTGGAAACAG 99644 Query 78784 CTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTT 78843 | || | |||||| |||| |||||||| || || | || || ||||| || || | Sbjct 99643 CAATGCGTGCAGCCAGAAGGGCATAATCGGGGTGCTTAGTGGTTAGTGTGGCAGCAATCT 99584 Query 78844 CTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTT 78903 | || || | | || ||||| | ||| || || ||| | || || ||||| || || | Sbjct 99583 CCGCAGCGAGTGTGTCCAACTCCACAGTGGTCACTCCACTGTACAGACCTTGGATCACCT 99524 Query 78904 TCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAA 78963 |||| | ||||| | || || |||||||| | ||| | || ||||| | ||| | Sbjct 99523 TCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGCCCGTAACAGAGCTTTTGGA 99464 Query 78964 TACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 | ||||| |||||||||||||| || || ||||| || ||||| Sbjct 99463 TTCGAGAGGTGATTTTATCAAACATGACGCGCTCCTGGCGTCCAT 99419 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || || || |||||||| |||| |||| ||| | || || || |||||||||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || || || ||| | || || | || || ||||| || | || |||| Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 | || | |||||||||| ||||| | | ||||| | ||||||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494 >seq11714 Length=3826745 Score = 132 bits (146), Expect = 7e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 77339 TCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC 77398 ||| || ||| || || ||| ||||| |||||||||||| || |||||||||| Sbjct 1501499 TCCTTTGCTAACAGGAGAGCCAGCATATGATTCATAAGGTCCATCATGGGCAGCTAGTTC 1501558 Query 77399 ACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 77458 |||||| || ||||| || | ||||| || || || ||||||| | ||||||| || Sbjct 1501559 ACAACTGGCCTCCAAAGCAGCATAATATATGGTCTCAAAAATCTGGATGTTGAGATGCTG 1501618 Query 77459 TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 ||||| ||| ||||| |||||| | | ||||| ||||| ||||| | |||||||| Sbjct 1501619 GGCTTCTTCACTTTCAAATGGATAACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAAC 1501678 Query 77519 TCCAATACCAATAGGTCTATG 77539 || || ||||||||||| || Sbjct 1501679 ACCGATTCCAATAGGTCTGTG 1501699 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 1500384 TCCACCCATAGAAGTGCATGCTTGTGAGTTTGCCATAGTTTGGTTCAGCAATGTGAATGT 1500443 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| || || || || || ||| | || || | ||||||||||| || | | | | Sbjct 1500444 TCAGAGATTGGCTCTGGTCAATGTAGGCACCACGGTCAGCCGCCATCTTGAGGACCATTT 1500503 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | ||||||| ||| || || | ||||||||||| Sbjct 1500504 TCTGAGAGATTTCCCACACAGTTTTGTAAAGCTGCTTTAGATCATCTGGAA 1500554 >seq11381 Length=12543884 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || ||| | || |||||||||||||| || | ||||| Sbjct 9286988 TCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTTTC 9286929 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||| | || ||||| || |||||||| ||||| || || ||||| || |||||||| Sbjct 9286928 AGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATGC 9286870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694524482556800