Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9898 659 0.0 seq11714 123 4e-23 >seq9898 Length=4754808 Score = 659 bits (730), Expect = 0.0 Identities = 1336/1967 (68%), Gaps = 31/1967 (2%) Strand=Plus/Minus Query 75654 TATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 75713 ||||||| || || |||||||||| | | || || | | | || ||||| || | Sbjct 101371 TATTCTTCATTTCCTCATTCCACAGTCCCCGTTCAGTCAGGTCCTTGAGCAGATGTGGGT 101312 Query 75714 TAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTT 75773 | ||||| ||||| ||||| || | ||||| || ||||| || || ||||| || | || Sbjct 101311 TTACAATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTT 101252 Query 75774 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833 | | || |||||||| || | ||||| || || |||||||| ||||| || |||| || Sbjct 101251 CGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATGGGGGCCAACA 101192 Query 75834 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 75893 | | || || || | ||||||| | | || || || || || ||||| ||||| | Sbjct 101191 ACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGA 101132 Query 75894 GATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATC 75953 | | | || || ||||| | |||||||| ||||| || || || | || | Sbjct 101131 GCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCCCTTACTCACTGGAGAAC 101072 Query 75954 CATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCAC 76013 | ||||| || |||| |||||| ||||| |||| ||||| || ||||| | || Sbjct 101071 CTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCCTCCAGGGCGG 101012 Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073 |||| || ||||| || || |||| | || || || |||||| |||| ||||| | Sbjct 101011 CGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCTTCAGGACTTTCAAATG 100952 Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 ||||| | | ||||| || |||||||| || ||||| |||||||| || || || || | Sbjct 100951 GATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCGATTGGCCTGT 100892 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | | ||| || || | || ||||| || | ||||| || ||||| || || || || | Sbjct 100891 GGCGCTTGTTCGAGTTCTCGGCTTCAGGGACTGGGTAGTAGTTAATGTCAATGATCTTGT 100832 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253 |||| ||||| |||| ||||||| || || || || ||||| | | | Sbjct 100831 TGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAGCTTTTTGAAGTCAAAGGTCCGTT 100772 Query 76254 CTA---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--T 76308 || | ||| |||| |||||||| ||||| || | ||||| ||||||||||||| | Sbjct 100771 CTGGAGTAACATACATGTTAAGAGCAATAGAAGCCAAGTTACAGACGGCTACCTCATCTT 100712 Query 76309 AGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATT 76368 || | | ||| | | ||||| ||||| | ||||| || |||||||| || | ||| Sbjct 100711 TGCTT--GTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATAGTGCCCAAATT 100654 Query 76369 TTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTC 76428 || || || ||||| ||||||| | || || || | | | |||||||| ||||| Sbjct 100653 CTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTTTC 100594 Query 76429 AATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATTATAGATTTGTAT 76486 | |||| || || || || | | ||| || || || ||| || | | ||| | Sbjct 100593 AGTCTGAGACTCTATGATGGCATACCACAC--CTGCTGAGCCTTGACCACCCGTTTCACT 100536 Query 76487 C-GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATC 76545 | || | || | | || | || || | | ||||| || || |||||| ||||| Sbjct 100535 CTGCCTTCCTGCT-CGTAGCGAGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATC 100477 Query 76546 CAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTT 76605 || ||||| || ||| | || |||||||| ||||| || | | | |||| || Sbjct 100476 CAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTT 100417 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 ||| || | |||||| |||||||| ||| || || ||||| | || | || || || Sbjct 100416 CATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTT 100357 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 || || ||||| || | || ||||| || | | ||| | |||||||| || || || Sbjct 100356 ACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCATGGCTCAAGGTA 100297 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 || || | |||| ||||||||||| || || || || | || | || ||||| || Sbjct 100296 CATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGCGCGCCGTGTTGTT 100237 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 || || |||| |||||| | || ||| || || ||||||||||||||| ||| || || Sbjct 100236 GTACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCCAGCAATGTAGCT 100177 Query 76846 TCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 ||| || | ||| |||| | || || || |||||||| ||| ||||| || Sbjct 100176 TCCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGATTTGGAGATGAG 100117 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 ||| || |||| | ||| ||||| ||||| || || || |||||| ||||| || || Sbjct 100116 AGCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAG 100057 Query 76966 AAAACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021 || || ||||| | || || || || |||||||| |||| || ||||| | Sbjct 100056 GAAGCAACTAGAGAGCTGTGGTCTGTTG----GTGCCTGCATTGAACAGAGTGGGAGAGG 100001 Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCC 77081 ||||||||||||| || ||||| || || ||||| || ||||| |||| || ||||| Sbjct 100000 CATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCAATATCAG 99941 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT 77141 || || ||||| ||||| || | ||| | ||| ||||| || || || | ||| Sbjct 99940 TTTTGTGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGGACGCTCAGCCACCTTGC 99881 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 77201 ||| ||||||| || ||| || || | || ||||| ||||| | || || |||| Sbjct 99880 CATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTTAAAGCCAAAGAAATTATAAGAAA 99821 Query 77202 AGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTA--ACAATATC 77259 | || || || || || ||| | || || || ||| | | |||| | |||||||| Sbjct 99820 AATCCCTATCATAGATTATAGCAGAGTTGAGGCGGTC--TTTGTTTGCAAGGACAATATC 99763 Query 77260 CA-TGACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTT--AGGATTAACATAGTT 77316 | | | | | || || || || || || | | ||| ||| || |||||||| Sbjct 99762 TAGGGTCTCTTG-GGAGATCATGGGGGA--GTGGCGCTTGTTTAAAGGGTTGACATAGTT 99706 Query 77317 AAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATAC 77376 || | || ||||| ||||| || || | || || || || || || || || || || Sbjct 99705 GAACAGATCCTCCATGACGTCACTGAACACCTTCTTGGTCTCTTTATGGAGGTTGGAAAC 99646 Query 77377 GGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTAT 77436 || || | ||||| |||| ||||| || || || | || || ||||| || || Sbjct 99645 AGCAATGCGTGCAGCCAGAAGGGCATAATCGGGGTGCTTAGTGGTTAGTGTGGCAGCAAT 99586 Query 77437 TTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAAC 77496 || || || | || || || || | ||| || ||||| | || || ||||| || || Sbjct 99585 CTCCGCAGCGAGTGTGTCCAACTCCACAGTGGTCACTCCACTGTACAGACCTTGGATCAC 99526 Query 77497 TTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCT 77556 ||||| | |||| || || |||||||| | ||| | || ||||| | ||| Sbjct 99525 CTTCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGCCCGTAACAGAGCTTTTG 99466 Query 77557 AATACGAGATGTGATTTTATCAAACATGACATTCTCCTTACATCCAT 77603 || ||||| |||||||||||||||||||| ||||| | ||||| Sbjct 99465 GATTCGAGAGGTGATTTTATCAAACATGACGCGCTCCTGGCGTCCAT 99419 Score = 89.7 bits (98), Expect = 7e-13 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || || || |||||||| || | |||| ||| | || || || |||||||||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || || ||| | || || | || || ||||| || | || |||| Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTT 75619 | || | |||||||||| ||||| | | ||||| | ||||||||| ||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG--GATTT 101489 >seq11714 Length=3826745 Score = 123 bits (136), Expect = 4e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 ||| |||||| || || ||| ||||| ||| |||| || || | |||||||||| Sbjct 1501499 TCCTTTGCTAACAGGAGAGCCAGCATATGATTCATAAGGTCCATCATGGGCAGCTAGTTC 1501558 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTG 76053 ||||| ||||| || ||| | ||||| || || || ||||||| | || |||| || Sbjct 1501559 ACAACTGGCCTCCAAAGCAGCATAATATATGGTCTCAAAAATCTGGATGTTGAGATGCTG 1501618 Query 76054 CGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAAC 76113 ||||| ||| ||||| |||||| | | ||||| || || ||||| || |||||||| Sbjct 1501619 GGCTTCTTCACTTTCAAATGGATAACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAAC 1501678 Query 76114 TCCAATACCAATAGGTCTATG 76134 || || ||||||||||| || Sbjct 1501679 ACCGATTCCAATAGGTCTGTG 1501699 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 1500384 TCCACCCATAGAAGTGCATGCTTGTGAGTTTGCCATAGTTTGGTTCAGCAATGTGAATGT 1500443 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| || || || || || ||| | || || | ||||||||||| || | | | | Sbjct 1500444 TCAGAGATTGGCTCTGGTCAATGTAGGCACCACGGTCAGCCGCCATCTTGAGGACCATTT 1500503 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||||||| ||| || || | ||||||||||| Sbjct 1500504 TCTGAGAGATTTCCCACACAGTTTTGTAAAGCTGCTTTAGATCATCTGGAA 1500554 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| |||||| || || ||||| |||||||| || || || || ||| Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || ||||| |||| || | ||| || |||||| || ||||| || | ||| | | Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233 Query 77114 ATATGCTGAGG 77124 ||||||||||| Sbjct 1503234 ATATGCTGAGG 1503244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712786287878400