Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq11603 158 2e-33 seq1 102 1e-16 >seq11603 Length=3851240 Score = 158 bits (174), Expect = 2e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 |||| ||| |||| ||||| | || ||||| ||||| ||||||||||| | |||||| Sbjct 1964547 TTGATGATGTCGAAGCCCACCTGGCCTCCGAAAGTGCTTGGCTTCCAGTATTCAGGGGAG 1964488 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| |||| |||||||||||||||||||||| || || |||| || | ||| || Sbjct 1964487 CAGATGGCGTTTCCCATGAGGCCTTTGAGGGAGAAGGGTGCTCCCATTTCCACCATGGTC 1964428 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || ||||| |||||||| | |||||| || |||| | || | |||||||||||| Sbjct 1964427 TCCCCGAAAATGGCGTTCTCTCTGGGCTTCTCGACCAGCAGACCCGGGTACAGCTCCACG 1964368 Query 8531 GCCTCGACGTCTCCGTA 8547 || || |||| |||||| Sbjct 1964367 GCGTCCACGTGTCCGTA 1964351 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| | |||||||| | | ||| || ||| | || || | | || || Sbjct 1961648 ATGAGTCTTGCAGTCTGGAATATTCTCTCATCGTCCCAGTAAGGGTGGACCTCCTTTAGC 1961589 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || || || | ||||||||| | |||||||| || |||||||||||||| ||||| Sbjct 1961588 ACGTCACATACTCGGTTGTGTTCACGAAGCCAGATGGTAGCGTACATCATGAGACCAGGG 1961529 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||||||||| || || || || || | | | | || || || | ||||||| Sbjct 1961528 ACCAGGCCAAAAGCTTCATGCCCCACTGCAAACCTCTGGGACTCTGGGACATGGGGAGGA 1961469 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 ||| ||||| ||| ||| || || || | ||||| ||||| || || | | |||| Sbjct 1961468 TAGTGCATGTCCACACCGACCTCCTTCACTGTCGGGGGGTACATCTCTCCATTCAGCATC 1961409 Query 9484 TG 9485 || Sbjct 1961408 TG 1961407 >seq1 Length=17765049 Score = 102 bits (112), Expect = 1e-16 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 8341 AGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTA 8400 |||||| || ||||| || | || || ||||| || || ||||| ||||||||||| Sbjct 4098287 AGTTGCACTTTTGACTATGCGAAAACCAGTCTCTCCTCCAAATGTGCTCGGCTTCCAGTA 4098228 Query 8401 CCCCGGGGAGCAGATGACGTTCGCCATG-AGGCCTTTGAGGGAGAACGGAGCCCCCAACT 8459 |||| ||||||| || | | ||| | | ||||| |||||||| ||||| |||| | Sbjct 4098227 TTCCGGTGAGCAGA-GAGGATTTCCAAGTAAACCTTTCAGGGAGAAAGGAGCGCCCATTT 4098169 Query 8460 CGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGT 8519 | | |||||||| || |||||||| | || || | || || | || | || || | Sbjct 4098168 CCACCATGCTCTCCCCAAAGATGGCATCAGGCCGTGCTTTCTCTAACATCACACCTGTAT 4098109 Query 8520 ACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 | | ||||| ||| || | ||||| |||||| || Sbjct 4098108 AAAACTCCAGAGCATCTATTTCTCCATAAAGGTCC 4098074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716727868844800