Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq11603 158 2e-33
seq1 102 1e-16
>seq11603
Length=3851240
Score = 158 bits (174), Expect = 2e-33
Identities = 153/197 (78%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410
|||| ||| |||| ||||| | || ||||| ||||| ||||||||||| | ||||||
Sbjct 1964547 TTGATGATGTCGAAGCCCACCTGGCCTCCGAAAGTGCTTGGCTTCCAGTATTCAGGGGAG 1964488
Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470
|||||| |||| |||||||||||||||||||||| || || |||| || | ||| ||
Sbjct 1964487 CAGATGGCGTTTCCCATGAGGCCTTTGAGGGAGAAGGGTGCTCCCATTTCCACCATGGTC 1964428
Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530
|| ||||| |||||||| | |||||| || |||| | || | ||||||||||||
Sbjct 1964427 TCCCCGAAAATGGCGTTCTCTCTGGGCTTCTCGACCAGCAGACCCGGGTACAGCTCCACG 1964368
Query 8531 GCCTCGACGTCTCCGTA 8547
|| || |||| ||||||
Sbjct 1964367 GCGTCCACGTGTCCGTA 1964351
Score = 113 bits (124), Expect = 6e-20
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||||| | |||||||| | | ||| || ||| | || || | | || ||
Sbjct 1961648 ATGAGTCTTGCAGTCTGGAATATTCTCTCATCGTCCCAGTAAGGGTGGACCTCCTTTAGC 1961589
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
|| || || || | ||||||||| | |||||||| || |||||||||||||| |||||
Sbjct 1961588 ACGTCACATACTCGGTTGTGTTCACGAAGCCAGATGGTAGCGTACATCATGAGACCAGGG 1961529
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|||||||||||||| || || || || || | | | | || || || | |||||||
Sbjct 1961528 ACCAGGCCAAAAGCTTCATGCCCCACTGCAAACCTCTGGGACTCTGGGACATGGGGAGGA 1961469
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
||| ||||| ||| ||| || || || | ||||| ||||| || || | | ||||
Sbjct 1961468 TAGTGCATGTCCACACCGACCTCCTTCACTGTCGGGGGGTACATCTCTCCATTCAGCATC 1961409
Query 9484 TG 9485
||
Sbjct 1961408 TG 1961407
>seq1
Length=17765049
Score = 102 bits (112), Expect = 1e-16
Identities = 153/215 (71%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 8341 AGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTA 8400
|||||| || ||||| || | || || ||||| || || ||||| |||||||||||
Sbjct 4098287 AGTTGCACTTTTGACTATGCGAAAACCAGTCTCTCCTCCAAATGTGCTCGGCTTCCAGTA 4098228
Query 8401 CCCCGGGGAGCAGATGACGTTCGCCATG-AGGCCTTTGAGGGAGAACGGAGCCCCCAACT 8459
|||| ||||||| || | | ||| | | ||||| |||||||| ||||| |||| |
Sbjct 4098227 TTCCGGTGAGCAGA-GAGGATTTCCAAGTAAACCTTTCAGGGAGAAAGGAGCGCCCATTT 4098169
Query 8460 CGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGT 8519
| | |||||||| || |||||||| | || || | || || | || | || || |
Sbjct 4098168 CCACCATGCTCTCCCCAAAGATGGCATCAGGCCGTGCTTTCTCTAACATCACACCTGTAT 4098109
Query 8520 ACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554
| | ||||| ||| || | ||||| |||||| ||
Sbjct 4098108 AAAACTCCAGAGCATCTATTTCTCCATAAAGGTCC 4098074
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716727868844800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |