Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10290 152 1e-31 >seq10290 Length=4455921 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || ||||| || |||||||| || ||| Sbjct 2173087 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 2173144 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 2173145 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 2173204 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || ||||| ||||||||||| || | ||||| | || || ||| Sbjct 2173205 AGAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGTACTCTGTCTGACTACAACA 2173264 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| |||||||| || || ||||||||| | | ||||| Sbjct 2173265 TCCAGAAAGAATCCACCCTTCATCTTGTTCTTCGTCTCAG 2173304 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || ||||| || |||||||| || ||| Sbjct 2171168 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 2171225 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 2171226 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 2171285 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||||| | || || |||| || || Sbjct 2171286 AGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATGGGCGCACCCTCTCCGACTACAATA 2171345 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| || || || || |||||||| Sbjct 2171346 TCCAAAAGGAGTCCACCCTCCATCTTGT 2171373 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || ||||| |||||||| |||||||| || ||| Sbjct 2170712 CAGATCTTTGTGAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTGGA--GCCCAGCG 2170769 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || || || |||||||||||||| ||||| || || || || |||| Sbjct 2170770 ACACGATTGAAAATGTTAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAGC 2170829 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| || ||||| | || || | || || ||| Sbjct 2170830 AGAGGTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGACTACAACA 2170889 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| |||||||| || || |||||||| || | || ||| Sbjct 2170890 TCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGA 2170930 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || ||||| | |||||||| || ||| Sbjct 2170940 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTTTGGAGGTGGA--GCCCAGCG 2170997 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||||||||||| ||||| || || || || |||| Sbjct 2170998 ACACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAGC 2171057 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || ||||| || ||||||||||| || | ||||| | || || ||| Sbjct 2171058 AGAGGCTGATTTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACTCTGTCTGACTACAACA 2171117 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || |||||||| || || |||||||| || | || ||| Sbjct 2171118 TTCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGA 2171158 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || || || || ||||| || ||||| || ||||| ||||| || || ||| Sbjct 2172859 CAAATCTTTGTCAAGACCCTCACCGGCAAAACTATTACCCTTGAGGTTGA--GCCCAGTG 2172916 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || ||||| ||| |||||||||||||| ||||| || || || || || | Sbjct 2172917 ACACCATTGAAAACGTGAAAGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAAC 2172976 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || | ||||| || || || || ||||| || ||||| | || || |||| || ||| Sbjct 2172977 AAAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTCTCCGACTACAACA 2173036 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| |||||||| || || || | || || | |||||| Sbjct 2173037 TCCAGAAAGAATCCACTCTTCACTTAGTCCTGCGCCTCAGA 2173077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203474872964280