Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3182 86.0 6e-12 >seq3182 Length=3053334 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 ||||||||| |||||||| || | || ||||| ||||| ||||| || |||||||| || Sbjct 792089 AACACCCATCCTTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAG 792030 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATT 16752 || || ||||||||||| ||||| || || Sbjct 792029 CGAGATGTTCTCCATGAAGTCAAAGGGGTT 792000 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 ||||||||| |||||||| || | || ||||| ||||| ||||| || |||||||| || Sbjct 885281 AACACCCATCCTTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAG 885222 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATT 16752 || || ||||||||||| ||||| || || Sbjct 885221 CGAGATGTTCTCCATGAAGTCAAAGGGGTT 885192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517500864652200