Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3182 102 8e-17 >seq3182 Length=3053334 Score = 102 bits (112), Expect = 8e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || ||||| || || || || || |||||||||||||| Sbjct 791471 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGC 791412 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || ||||| ||||| | || ||||| || | ||||| | |||||| || | ||| Sbjct 791411 TCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCA 791352 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 ||||| || || || || || ||||| |||| ||||| || Sbjct 791351 AATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGC 791311 Score = 102 bits (112), Expect = 8e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || ||||| || || || || || |||||||||||||| Sbjct 884686 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGC 884627 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || ||||| ||||| | || ||||| || | ||||| | |||||| || | ||| Sbjct 884626 TCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCA 884567 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 ||||| || || || || || ||||| |||| ||||| || Sbjct 884566 AATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGC 884526 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || || |||||||| || || || |||||||| ||||| ||||| Sbjct 800992 ATGTAAGTGTCAATAAGCAAGCTGTACATCTCAGAATGGATGTTCTCCATGGCGATCTGG 800933 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || ||||||||||| || ||||| | | || |||||| | |||| || ||| || Sbjct 800932 AAGCCATAGAAGCAACGTGCCTCTGTGACCTGCACTTCCTGGGAAAAACGCTCCACC 800876 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || || |||||||| || || || |||||||| ||||| ||||| Sbjct 883904 ATGTAAGTGTCAATAAGCAAGCTGTACATCTCAGAATGGATGTTCTCCATGGCGATCTGG 883845 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || ||||||||||| || ||||| | | || |||||| | |||| || ||| || Sbjct 883844 AAGCCATAGAAGCAACGTGCCTCTGTGACCTGCACTTCCTGGGAAAAACGCTCCACC 883788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511370194617800