Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq3182 102 8e-17
>seq3182
Length=3053334
Score = 102 bits (112), Expect = 8e-17
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243
||||| || ||||| || || || ||||| || || || || || ||||||||||||||
Sbjct 791471 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGC 791412
Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303
|| ||||| ||||| | || ||||| || | ||||| | |||||| || | |||
Sbjct 791411 TCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCA 791352
Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
||||| || || || || || ||||| |||| ||||| ||
Sbjct 791351 AATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGC 791311
Score = 102 bits (112), Expect = 8e-17
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243
||||| || ||||| || || || ||||| || || || || || ||||||||||||||
Sbjct 884686 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGC 884627
Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303
|| ||||| ||||| | || ||||| || | ||||| | |||||| || | |||
Sbjct 884626 TCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCA 884567
Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
||||| || || || || || ||||| |||| ||||| ||
Sbjct 884566 AATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGC 884526
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531
|| || || ||||| || || |||||||| || || || |||||||| ||||| |||||
Sbjct 800992 ATGTAAGTGTCAATAAGCAAGCTGTACATCTCAGAATGGATGTTCTCCATGGCGATCTGG 800933
Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588
|| ||||||||||| || ||||| | | || |||||| | |||| || ||| ||
Sbjct 800932 AAGCCATAGAAGCAACGTGCCTCTGTGACCTGCACTTCCTGGGAAAAACGCTCCACC 800876
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531
|| || || ||||| || || |||||||| || || || |||||||| ||||| |||||
Sbjct 883904 ATGTAAGTGTCAATAAGCAAGCTGTACATCTCAGAATGGATGTTCTCCATGGCGATCTGG 883845
Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588
|| ||||||||||| || ||||| | | || |||||| | |||| || ||| ||
Sbjct 883844 AAGCCATAGAAGCAACGTGCCTCTGTGACCTGCACTTCCTGGGAAAAACGCTCCACC 883788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511370194617800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |