Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2049 86.0 5e-12 >seq2049 Length=84106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 ||| | |||| || || || || || || | || ||||||||||| ||||||| Sbjct 10185 CCCCTGATGGCGCTGCCCCCGTGCCATGCGCTGTGCCAGTTTTACGTGTGTGACGGTGAG 10126 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT 19085 | || |||||| | |||||| ||||||| || ||||| || || || || |||||||| Sbjct 10125 CTGTCGTGCCAACTGTACCAGCGATCGGGAGACATGGGTCTGGGCGTGCCCTTCAACATC 10066 Query 19086 GCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || | || || || || |||||||| | || || | ||||| || || Sbjct 10065 GCCAGCTACGCCCTGCTCACCTACATGATCGCCCACATCACAGGCCTCAA 10016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399470331176175