Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5361 95.1 1e-14 >seq5361 Length=1636355 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 ||||| ||||||||||| |||||||||| ||||| || ||||| |||||||||||| | Sbjct 1219745 ACTTCCTCCACTGTCCAGAATGATGCCTGTGCCTGCTTGTACATCTTCCAGATGTCAGGG 1219686 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTT-TTGCAAGGATTGGTTC 24745 || || || || ||||| ||||| | ||||||||| || ||| | |||||| Sbjct 1219685 TACTGGATAGGGAAAATGACAAACCGTCTTGGATTTTCTTTCAA-TAGTGGTTC 1219633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593670280189200