Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2049 185 1e-41 >seq2049 Length=84106 Score = 185 bits (204), Expect = 1e-41 Identities = 149/180 (83%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || |||||| |||| |||||||| ||||||||| ||||||| ||||||||| |||||||| Sbjct 10015 CTTGAGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 10074 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 |||||| ||||| |||||||| ||||| ||||||||||| ||||| || ||||| ||| | Sbjct 10075 GGGCACGCCCAGACCCATGTCTCCCGATCGCTGGTACAGTTGGCACGACAGCTCACCGTC 10134 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGC 145925 |||||| ||||||||||| ||||| || ||||| ||||| ||||||||| || Sbjct 10135 ACACACGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCTGC 10194 Score = 172 bits (190), Expect = 6e-38 Identities = 146/180 (81%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || |||| |||||||| ||||||||| ||||||| ||||||||| |||||||| Sbjct 9496 CTTGAGTCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 9555 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 |||||| ||||| |||||||| |||| ||||||||||| ||||| || ||||| ||| | Sbjct 9556 GGGCACGCCCAGACCCATGTCTCCCGGTCGCTGGTACAGTTGGCACGACAGCTCACCGTC 9615 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGC 145925 | |||| ||||||||||| ||||| || ||||| ||||| ||||||||| || Sbjct 9616 ACACGCGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCTGC 9675 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 |||| | |||||| |||| ||||||||||| ||||| || ||||||||||| || ||| Sbjct 12660 GTACTCTGCCCCGTAGTGTCTCCACTGGAAGCCGTACACTGGCCCCAGGTCTCCCTCCTC 12719 Query 146100 CCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTT 146159 | |||| | ||| ||| | ||||||||||| || |||||||||||||||||||| Sbjct 12720 TCGGTGCTGGAAGCCGCTGCGGTCCAGGAAGTCCCGAGAGCCGTTGGCGTCCCAGATCTT 12779 Query 146160 GACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCC 146199 |||||| || | || ||||| |||| || ||||| ||| Sbjct 12780 CACGCCCTTCTCAGACAGCTCCTTGGCGTTGGTGGAGCCC 12819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590025795236600