Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2607 122 1e-22 seq5898 84.2 3e-11 >seq2607 Length=1285138 Score = 122 bits (134), Expect = 1e-22 Identities = 234/343 (68%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| || ||| |||||||| ||| | | ||| || | | | ||||||| | || Sbjct 692660 GAGGAGCTCCTTGATGTCGGCCTCGAGATCTTTGGTGAGGAACCTGCGGCTGTAGCGCCG 692601 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| ||||| || |||| |||||||||||||||||| |||||||| |||| Sbjct 692600 GAAGGGCTCTCCGTCGCGGCCGACCAGGAACTTCTCGAAGTTCCAAGCCACGTCAGTGCG 692541 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 | | || ||| |||| ||| || |||||| ||| ||| | | | |||||| | Sbjct 692540 GGAGACGGGACTCCAGATGATGTTCTTTGGGTCGGTCATGAGGGGGGTGGGGTCGTCACG 692481 Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTG 83293 ||| | | || ||| | ||||||| ||| || || || || ||| || ||||| Sbjct 692480 AGGGACTGAGAGCCGCTCCCTCAGGAAGGTGAACAGAGGGTGGGCGTCCTGGC--CGTTG 692423 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 || || |||||| | ||| | || ||||||||||| || || || | ||||| | Sbjct 692422 ACATCAGTCTTCTCCAGGAGGGTGGTTTTGGGCTCGAAGCCCTTGCCTGGCCTGACGTAC 692363 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGT 83396 ||||| || || ||||||| | || | | | || ||||||| Sbjct 692362 TTCAGACAATTCAGGATCTCGTCGTTGTTGCCATTCTCCTGGT 692320 >seq5898 Length=457071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||||| || |||||||| || ||||| || || || ||||||| | | || | Sbjct 104912 CCTGGTAGCCAAACTGGTTGCAGGGGAAGCCCAGGACCACCAGCCGATGTGGA--TAC-C 104856 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | ||| |||| ||| | ||| ||| | |||||| ||| | ||||||||||| || | Sbjct 104855 GGCTCTGGAGCTGGTTGAGCTGGGTGAAGTCCCGGGTTGTGGTCCCTCAGAGGGAGGCCA 104796 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCC 83537 | ||||||||||||| ||||| |||| Sbjct 104795 CATTCTCGATGAGCACCACCCGCCCCC 104769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608744177126600