Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5865 158 1e-33 seq257 143 3e-29 seq3182 123 3e-23 >seq5865 Length=143300 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || ||||||||| | || || || || | | Sbjct 25576 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25517 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||| ||||| ||| | ||||| Sbjct 25516 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25458 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 25457 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 25398 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| ||||| | || || ||| Sbjct 25397 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCCTTAGAGGGGGC 25349 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || ||||||||| | || || || || | | Sbjct 25804 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25745 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||| ||||| ||| | ||||| Sbjct 25744 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25686 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 25685 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 25626 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || || || || |||| ||||||| ||| Sbjct 25625 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGC 25577 Score = 154 bits (170), Expect = 2e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || || || || || |||||||| || ||||||||| | || || || | Sbjct 26265 GAAAGATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGG 26206 Query 40745 CCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | | ||||| | | | |||| |||||| || || | |||||||| ||||| ||| | Sbjct 26205 CAAGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCA 26147 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| | | |||| ||| ||||| |||||||| || | |||||||| |||| Sbjct 26146 GACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGAC 26087 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| ||| |||| || || || || |||| ||||||| ||| Sbjct 26086 TACAACATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGC 26033 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || ||||||||| | || || || || | | Sbjct 26032 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25973 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||| ||||| ||| | ||||| Sbjct 25972 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25914 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| ||||| |||||||| || | | ||||| ||||||||| Sbjct 25913 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCCAACCCTGTCCGACTACAA 25854 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || || || || |||| ||||||| ||| Sbjct 25853 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGC 25805 >seq257 Length=13053552 Score = 143 bits (158), Expect = 3e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| ||||||||| | || || || | Sbjct 5262920 AAAGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCC 5262979 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | |||||| ||||| | |||||||||||||||||| | || Sbjct 5262980 CAGTGACACTATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCCCCTGA 5263039 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| || || ||| |||| || | || ||||| |||||| Sbjct 5263040 CCAGCAGCGTCTGATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGTACCCTATCCGACTA 5263099 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||||| |||| || ||||| ||| Sbjct 5263100 CAACATCCAGAAGGAATCCACCCTCCATCTTGTG 5263133 >seq3182 Length=3053334 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||| ||||| || || || |||||| |||| || || ||| || || Sbjct 791296 GGTGAGCGAGTGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCA 791355 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| ||||| | || || ||||| ||||| |||||| ||| ||||| Sbjct 791356 TCCATTTTCTGGCTGAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTT 791415 Query 117152 ATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCA 117204 ||| ||| || ||||| ||||| || ||||||||||| || |||||||||| Sbjct 791416 ATCAGCAGAGATGAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAAGCA 791468 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||| ||||| || || || |||||| |||| || || ||| || || Sbjct 884511 GGTGAGCGAGTGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCA 884570 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| ||||| | || || ||||| ||||| |||||| ||| ||||| Sbjct 884571 TCCATTTTCTGGCTGAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTT 884630 Query 117152 ATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCA 117204 ||| ||| || ||||| ||||| || ||||||||||| || |||||||||| Sbjct 884631 ATCAGCAGAGATGAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAAGCA 884683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || | ||||| |||||||| ||||||| || |||||||| ||||| || Sbjct 790744 GGTGGAGCGGTTTACCCAGGAAGTGCAGGTCACCGAGGCACGTTGCTTCTATGGCTTCCA 790803 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||| | || || || ||||| Sbjct 790804 GATCGCCATGGAGAACATCCATTCTGAGATGTA 790836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| |||||||| | ||||| |||||||| | ||||| || |||||||| ||||| || Sbjct 800876 GGTGGAGCGTTTTTCCCAGGAAGTGCAGGTCACAGAGGCACGTTGCTTCTATGGCTTCCA 800935 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||| | || || || ||||| Sbjct 800936 GATCGCCATGGAGAACATCCATTCTGAGATGTA 800968 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| |||||||| | ||||| |||||||| | ||||| || |||||||| ||||| || Sbjct 883788 GGTGGAGCGTTTTTCCCAGGAAGTGCAGGTCACAGAGGCACGTTGCTTCTATGGCTTCCA 883847 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||| | || || || ||||| Sbjct 883848 GATCGCCATGGAGAACATCCATTCTGAGATGTA 883880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || | ||||| |||||||| | ||||| || |||||||| ||||| || Sbjct 800040 GGTGGAGCGGTTTACCCAGGAAGTGCAGGTCACAGAGGCACGTTGCTTCTATGGCTTCCA 800099 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||| | || || || ||||| Sbjct 800100 GATCGCCATGGAGAACATCCATTCTGAGATGTA 800132 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||||| || || || ||||||| || || |||| ||||| |||| |||||| Sbjct 790320 GAGAACCCCCGTCGCTTTGTCGTTTTCCCTATCCAGTACCATGACATATGGCAGATGTAC 790379 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || || || ||||| || |||||||| | || ||||||| Sbjct 790380 AAGAAAGCAGAGGCCTCTTTCTGGACAGCAGAAGAGGTGG 790419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515174665740400