Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq5865 158 1e-33
seq257 143 3e-29
seq3182 123 3e-23
>seq5865
Length=143300
Score = 158 bits (174), Expect = 1e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || ||||||||| | || || || || | |
Sbjct 25576 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25517
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | |||||||| ||||| ||| | |||||
Sbjct 25516 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25458
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||| ||||| |||||||| || | |||||||| |||||||||
Sbjct 25457 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 25398
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| |||| || || || ||| ||||| | || || |||
Sbjct 25397 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCCTTAGAGGGGGC 25349
Score = 154 bits (170), Expect = 2e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || ||||||||| | || || || || | |
Sbjct 25804 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25745
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | |||||||| ||||| ||| | |||||
Sbjct 25744 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25686
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||| ||||| |||||||| || | |||||||| |||||||||
Sbjct 25685 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 25626
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||| ||| |||| || || || || |||| ||||||| |||
Sbjct 25625 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGC 25577
Score = 154 bits (170), Expect = 2e-32
Identities = 176/234 (75%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744
|||| ||||| || || || || || |||||||| || ||||||||| | || || || |
Sbjct 26265 GAAAGATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGG 26206
Query 40745 CCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803
| | ||||| | | | |||| |||||| || || | |||||||| ||||| ||| |
Sbjct 26205 CAAGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCA 26147
Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863
|||||||| | | |||| ||| ||||| |||||||| || | |||||||| ||||
Sbjct 26146 GACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGAC 26087
Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||||| ||| |||| || || || || |||| ||||||| |||
Sbjct 26086 TACAACATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGC 26033
Score = 145 bits (160), Expect = 8e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || ||||||||| | || || || || | |
Sbjct 26032 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25973
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | |||||||| ||||| ||| | |||||
Sbjct 25972 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25914
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||| ||||| |||||||| || | | ||||| |||||||||
Sbjct 25913 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCCAACCCTGTCCGACTACAA 25854
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||| ||| |||| || || || || |||| ||||||| |||
Sbjct 25853 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGC 25805
>seq257
Length=13053552
Score = 143 bits (158), Expect = 3e-29
Identities = 160/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||| ||||| || ||||| || || || || ||||| ||||||||| | || || || |
Sbjct 5262920 AAAGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCC 5262979
Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|| |||| | | | |||||| ||||| | |||||||||||||||||| | ||
Sbjct 5262980 CAGTGACACTATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCCCCTGA 5263039
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| || || |||| ||| || || ||| |||| || | || ||||| ||||||
Sbjct 5263040 CCAGCAGCGTCTGATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGTACCCTATCCGACTA 5263099
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||||||||| |||| || ||||| |||
Sbjct 5263100 CAACATCCAGAAGGAATCCACCCTCCATCTTGTG 5263133
>seq3182
Length=3053334
Score = 123 bits (136), Expect = 3e-23
Identities = 131/173 (76%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| ||||| |||| ||||| || || || |||||| |||| || || ||| || ||
Sbjct 791296 GGTGAGCGAGTGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCA 791355
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
|||| || ||||| ||||| | || || ||||| ||||| |||||| ||| |||||
Sbjct 791356 TCCATTTTCTGGCTGAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTT 791415
Query 117152 ATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCA 117204
||| ||| || ||||| ||||| || ||||||||||| || ||||||||||
Sbjct 791416 ATCAGCAGAGATGAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAAGCA 791468
Score = 123 bits (136), Expect = 3e-23
Identities = 131/173 (76%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| ||||| |||| ||||| || || || |||||| |||| || || ||| || ||
Sbjct 884511 GGTGAGCGAGTGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCA 884570
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
|||| || ||||| ||||| | || || ||||| ||||| |||||| ||| |||||
Sbjct 884571 TCCATTTTCTGGCTGAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTT 884630
Query 117152 ATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCA 117204
||| ||| || ||||| ||||| || ||||||||||| || ||||||||||
Sbjct 884631 ATCAGCAGAGATGAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAAGCA 884683
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| || | ||||| |||||||| ||||||| || |||||||| ||||| ||
Sbjct 790744 GGTGGAGCGGTTTACCCAGGAAGTGCAGGTCACCGAGGCACGTTGCTTCTATGGCTTCCA 790803
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895
|||||||||||||||| | || || || |||||
Sbjct 790804 GATCGCCATGGAGAACATCCATTCTGAGATGTA 790836
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| |||||||| | ||||| |||||||| | ||||| || |||||||| ||||| ||
Sbjct 800876 GGTGGAGCGTTTTTCCCAGGAAGTGCAGGTCACAGAGGCACGTTGCTTCTATGGCTTCCA 800935
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895
|||||||||||||||| | || || || |||||
Sbjct 800936 GATCGCCATGGAGAACATCCATTCTGAGATGTA 800968
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| |||||||| | ||||| |||||||| | ||||| || |||||||| ||||| ||
Sbjct 883788 GGTGGAGCGTTTTTCCCAGGAAGTGCAGGTCACAGAGGCACGTTGCTTCTATGGCTTCCA 883847
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895
|||||||||||||||| | || || || |||||
Sbjct 883848 GATCGCCATGGAGAACATCCATTCTGAGATGTA 883880
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| || | ||||| |||||||| | ||||| || |||||||| ||||| ||
Sbjct 800040 GGTGGAGCGGTTTACCCAGGAAGTGCAGGTCACAGAGGCACGTTGCTTCTATGGCTTCCA 800099
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895
|||||||||||||||| | || || || |||||
Sbjct 800100 GATCGCCATGGAGAACATCCATTCTGAGATGTA 800132
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650
||||||||||| || || || ||||||| || || |||| ||||| |||| ||||||
Sbjct 790320 GAGAACCCCCGTCGCTTTGTCGTTTTCCCTATCCAGTACCATGACATATGGCAGATGTAC 790379
Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690
|| || || ||||| || |||||||| | || |||||||
Sbjct 790380 AAGAAAGCAGAGGCCTCTTTCTGGACAGCAGAAGAGGTGG 790419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515174665740400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |