Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2049 86.0 4e-12 >seq2049 Length=84106 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| ||||||||||| | || | || | ||||| || ||||| || ||||| || Sbjct 10025 GTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCC 10084 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || ||||| || | |||| || || | || || || |||| || |||||||| ||| Sbjct 10085 AGACCCATGTCTCCCGATCGCTGGTACAGTTGGCACGACAGCTCACCGTCACACACGTAA 10144 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | || |||| || ||||||| |||||| Sbjct 10145 AACTGGCACAGCGCATGGCACGGGGGCAGCGCCAT 10179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346754774236550