Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3021 91.5 1e-13 seq257 87.8 2e-12 >seq3021 Length=1423706 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||||||||| || || ||||| ||||||||||||||| |||||| ||| Sbjct 287162 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 287221 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | |||||||||||||| ||||| || || Sbjct 287222 TCAGACGCTGCTGATCAGGAGGGATACC 287249 >seq257 Length=13053552 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| ||| | || || ||| || | Sbjct 5263131 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCTTCCA 5263072 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || || ||| |||| ||||||||||| || || || |||||||| ||||| | Sbjct 5263071 ACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGA 5263012 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | || | ||||| || ||| ||||| | ||| | || |||| Sbjct 5263011 TTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGC 5262952 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || || || |||||||| Sbjct 5262951 CAGTCAGGGTCTTCACGAAGATCTGCAT 5262924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433793838265180