Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq257 109 6e-19 seq2444 102 9e-17 seq3371 98.7 1e-15 seq4994 95.1 1e-14 seq3833 95.1 1e-14 seq4094 87.8 2e-12 seq2663 87.8 2e-12 seq2204 87.8 2e-12 seq1449 86.0 7e-12 >seq257 Length=13053552 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || || | || || | ||||||||| ||||| Sbjct 5263114 TCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCTTCCAACTGCTTACCGGCGAAG 5263055 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | || ||| |||||| |||||| |||| || Sbjct 5263054 ATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATTTTAGCCTTGACATTC 5262995 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 5262994 TCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 5262935 Query 43173 AAGATTTGCATTTTTACGCCGAA 43195 ||||| ||||| ||||| | ||| Sbjct 5262934 AAGATCTGCATCTTTACACTGAA 5262912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 10069749 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCACTA 10069808 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 10069809 TACTAACGAGGATTG 10069823 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 10067402 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCACTA 10067461 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 10067462 TACTAACGAGGAT 10067474 >seq2444 Length=222161 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| |||||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 197610 AACAATGTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 197551 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 197550 TCACCACTATACTAACGAGGA 197530 Score = 100 bits (110), Expect = 3e-16 Identities = 79/92 (86%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 60047 AACGTTTATGAAAAATT-TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACA 60105 || |||| | ||| ||| |||||| || | |||||| |||||| |||||||||||||||| Sbjct 187800 AAGGTTT-TAAAACATTGTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACA 187742 Query 60106 GGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||||||||| |||||| Sbjct 187741 GGCGGGGATACTCACCACTATACTAACGAGGA 187710 Score = 100 bits (110), Expect = 3e-16 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 60050 GTTTATGAAAAATT-TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGC 60108 ||||| ||| ||| |||||| || | |||||| |||||| ||||||||||||||||||| Sbjct 188425 GTTTA--AAACATTGTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGC 188368 Query 60109 GGACATACTCACCACTATACTACCGAGGA 60137 || |||||||||||||||||| |||||| Sbjct 188367 GGGGATACTCACCACTATACTAACGAGGA 188339 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 198276 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 198217 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 198216 TATACTAACGAGGA 198203 >seq3371 Length=3225571 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 2698723 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 2698664 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 2698663 TATACTAACGAGGA 2698650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2701463 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2701404 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2701403 TACTAACGAGGA 2701392 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2693151 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCACTA 2693210 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 2693211 TACTAACGAGGATTG 2693225 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2694287 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCACTA 2694346 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 2694347 TACTAACGAGGAGTG 2694361 >seq4994 Length=820280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 812232 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 812173 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 812172 TACTAACGAGGA 812161 >seq3833 Length=6093471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5353894 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5353953 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 5353954 TACTAACGAGGACTG 5353968 >seq4094 Length=298275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 16327 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCACTA 16268 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 16267 TACTAACGAGGAT 16255 >seq2663 Length=1584130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 15211 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCACTA 15270 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 15271 TACTAACGAGGAT 15283 >seq2204 Length=200101 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 199930 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCACT 199989 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 199990 ATACTAACGAGGA 200002 >seq1449 Length=84295 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||| Sbjct 41730 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGTGGGGATACTCACCACTATACTAAAGAG 41789 Query 60136 GA 60137 || Sbjct 41790 GA 41791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571768173516200