Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_002519.1 Length=39898 Score E Sequences producing significant alignments: (Bits) Value seq204 98.7 3e-16 >seq204 Length=1493 Score = 98.7 bits (108), Expect = 3e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 1653 TGGACTTCTTGGAACAATGCACGTTCTGAAAAGGTTAAAGAGTGGAAAGAGCTTCGTAAC 1712 ||||| |||| ||||| |||| ||||||| || |||||||||| || | |||||| Sbjct 143 TGGACGTCTTTTAACAACCAACGTCGTGAAAAGATTGAAGAGTGGAAGGAATTACGTAAC 202 Query 1713 TATATCTATGCTACGGACACTCGTACTACCTCTAACAACAAGTTGCCTTGGTCTAACTCT 1772 || ||| ||| || ||||| || || ||||| | | ||||||||| |||||| Sbjct 203 TACGTCTTTGCCACTGACACCACAACCACAGCTAACCAGACATTGCCTTGGAAGAACTCT 262 Query 1773 ACAACTACCCCCAAGCTAACTCAGATTGCTGACAACCTTCACGCAAACTACTTTGCTGCT 1832 ||||| ||| ||||| || || |||||||| ||| | |||||||| |||| Sbjct 263 ACAACACTCCCTAAGCTTTGCCAAATACGAGACAACCTGCACTCCAACTACTTGTCTGCC 322 Query 1833 TTGTTCCCT 1841 | |||||| Sbjct 323 CTCTTCCCT 331 Score = 91.5 bits (100), Expect = 4e-14 Identities = 299/461 (65%), Gaps = 19/461 (4%) Strand=Plus/Plus Query 2492 CACGTTGGCTGGCGTGACCGCCCTGACAACCTCTACAGCATGGGGCCACTTGATAACCTC 2551 || ||||| |||||| || ||||| ||||| | ||||| || | || ||| | Sbjct 989 CATGTTGGGTGGCGTACACGACCTGATAACCTGTGGGCTATGGGACCTTTGGACAACTTG 1048 Query 2552 GTAGGTATGCAGTATCGCATTGATCACCTTGAGAACCTTAAGGCCGATGTGTTTGATCAG 2611 || |||||||| || || ||||| ||||||||||||||||| || || | | || | Sbjct 1049 GTTGGTATGCAATACCGTATTGACCACCTTGAGAACCTTAAAGCTGACGCAATGGACTTG 1108 Query 2612 ATTGCCTACCCTGTCCTTAAGATCAGGGGTGACGTAGAGGACTTCGACTTCGAGCCTAAT 2671 || |||| ||| || | |||||| ||||| || || | | | || | Sbjct 1109 TGTGTGCACCCACCGCTTGTCATTAAGGGTGAGGTAGAAGAGTTTGTATGGGGCCCAGGT 1168 Query 2672 GCTCGTATCTACTTGGGCGATGAGGGTGATGTAGGTTACCTTGT-----ACCTGACAGTA 2726 ||| || || | ||| | ||||| |||| | | || | |||||| | Sbjct 1169 GCTGAGATACACACCGACGAGAATGGTGACGTAGCTGAGCTAGGCAAGAACCTGA----A 1224 Query 2727 CAGCACTTAATGCAGACTT---CCAGATTCAGAACATCGAAGCTAAGATGGAGATGATGG 2783 | ||| ||| |||| | | | ||| | |||| || ||||| || Sbjct 1225 CGGCA-TTATAGCAGCGTCTAACGAAATTGGCTCTCTTGAAGAAAAAATGGAACTGTACT 1283 Query 2784 CAGGTGCTCCTCGTGAGGCTATGGGTATCCGTAGTGCAGGTGAGAAGACAGCCTTTGAAG 2843 | || || || |||||||||||||| || || | |||||||||||||||||||| |||| Sbjct 1284 CTGGCGCACCACGTGAGGCTATGGGGATTCGCACAGCAGGTGAGAAGACAGCCTTCGAAG 1343 Query 2844 TAGGTCAGCTTATG---ACAGCTGCTGGTCGTATCTTCCAACACAAGACTGCTCACTTTG 2900 | |||| || | |||||||| |||||||| ||| | || | | | ||||| Sbjct 1344 T---TCAGTCGTTGCAAAATGCTGCTGGCCGTATCTTTCAAGAGAAAATTACCAGCTTTG 1400 Query 2901 AACGTGTGTTTCTTGAGCCTATCCTGAACGCCATGCTTGAG 2941 | || | | || ||||| | ||||| |||||||| ||| Sbjct 1401 AGATTGAGCTCCTAGAGCCCACACTGAATGCCATGCTAGAG 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127541525987800