Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5865 118 7e-22 seq257 100 2e-16 >seq5865 Length=143300 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | ||| |||||||| ||||||||||||||| Sbjct 26034 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 26093 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| || | || ||||||||| ||| Sbjct 26094 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 26153 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | | | || | ||| | | || || Sbjct 26154 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACC 26213 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || || ||||| || |||||||||||||||||| Sbjct 26214 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATC 26261 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | ||| |||||||| ||||||||||||||| Sbjct 25578 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25637 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| || | || ||||||||| ||| Sbjct 25638 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25697 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | | | || | ||| | | || || Sbjct 25698 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACC 25757 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || ||||| || ||||| ||||||||||| Sbjct 25758 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25804 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | ||| || ||||| ||||||||||||||||| || | || Sbjct 25364 CAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 25423 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| ||||| || | || ||||||||| ||| | || || ||||| Sbjct 25424 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 25483 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | ||| | | || || || | |||||||| Sbjct 25484 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGT 25543 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || ||||| ||||||||||| Sbjct 25544 CTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25576 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | ||| |||||||| ||||||||||||||| Sbjct 25806 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25865 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || |||| ||||||||| ||||| || | || ||||||||| ||| Sbjct 25866 AGGGTTGGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25925 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | | | || | ||| | | || || Sbjct 25926 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACC 25985 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || ||||| || ||||| ||||||||||| Sbjct 25986 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 26032 >seq257 Length=13053552 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||| || ||| | || ||||||||||| || ||||| Sbjct 5263115 TTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCTTCCAACTGCTTACCGGCGAA 5263056 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| ||| | || ||| ||||| || || ||| | || Sbjct 5263055 GATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATTTTAGCCTTGACATT 5262996 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || || | |||||||| ||||| || || || ||||| Sbjct 5262995 CTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 5262936 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 5262935 GAAGATCTGCATC 5262923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323044772602400