Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5865 127 2e-24 seq257 107 2e-18 >seq5865 Length=143300 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| ||| |||| | || ||| Sbjct 25368 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCC 25427 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||||| ||| ||||| || || | || || |||||| Sbjct 25428 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 25487 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||||| | ||| || ||||| Sbjct 25488 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTC 25547 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || |||||||| ||||| |||||| Sbjct 25548 CCCGTGAGGGTCTTCACGAAGATCTGCATG 25577 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||| ||||| |||||||||||| ||| ||| | || ||| Sbjct 26052 ACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 26111 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||||| ||| ||||| || || | || || |||||| Sbjct 26112 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 26171 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||||| | ||| || ||||| Sbjct 26172 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTC 26231 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || |||||||||||||| ||||| || Sbjct 26232 CCCGTGAGGGTCTTCACAAAGATCTGCATCTT 26263 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||| ||||| |||||||||||| ||| ||| | || ||| Sbjct 25596 ACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 25655 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||||| ||| ||||| || || | || || |||||| Sbjct 25656 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 25715 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||||| | ||| || ||||| Sbjct 25716 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTC 25775 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || |||||||| ||||| |||||| Sbjct 25776 CCCGTGAGGGTCTTCACGAAGATCTGCATG 25805 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGT 45185 |||| ||| || ||| ||| ||||| |||||||||||| || |||| || | || | Sbjct 25824 ACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTTG--GACCATCTT 25881 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 |||| || || || ||||| ||||||| ||| ||||| || || | || || |||||| Sbjct 25882 CCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCT 25941 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||| || | | | | |||| | |||||||||| | ||| || |||| Sbjct 25942 GGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCT 26001 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| || |||||||| ||||| |||||| Sbjct 26002 TCCCCGTGAGGGTCTTCACGAAGATCTGCATG 26033 >seq257 Length=13053552 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| | || |||| || || |||||||| Sbjct 5263114 TCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCTTCCAACTGCTTACCGGCGAAG 5263055 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| ||||| ||||| || || | ||||| |||||| ||||| ||| || | Sbjct 5263054 ATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATTTTAGCCTTGACATTC 5262995 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | ||||||||| | ||| || |||||||| ||||| |||||||| Sbjct 5262994 TCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 5262935 Query 45326 AAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 5262934 AAGATCTGCATCTT 5262921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395041904420215