Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq257 89.7 4e-13 >seq257 Length=13053552 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||||| | || || ||||||||| || Sbjct 5263126 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCTTCCAACTGC 5263067 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || |||| || | || || || ||| | ||| || || || |||| Sbjct 5263066 TTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATTTTA 5263007 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| |||||||| |||||| |||| ||||||| | ||||| ||| Sbjct 5263006 GCCTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTC 5262947 Query 18303 AATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 | || || || || || ||||| |||| ||| Sbjct 5262946 AGGGTCTTCACGAAGATCTGCATCTTTACACT 5262915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379312030191675