Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1943 114 1e-20 seq257 105 6e-18 seq5865 100 3e-16 seq5361 89.7 5e-13 >seq1943 Length=432286 Score = 114 bits (126), Expect = 1e-20 Identities = 145/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| || ||| ||||| || ||||| || || ||||||||||| ||||| || ||| Sbjct 423454 ACCTCATCCTTGCTGGTGTATTCAACAATCTCTGTGCATAGATTGCTGCACTTGATTGTG 423395 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || ||| ||||| || || ||||| | ||| || ||||||||||| || ||| Sbjct 423394 CCAAGGTTCTGCTGATTGCTCTTGCGGTTGCAGGCATCTTTATAGAGCATGTAAGGTGTG 423335 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGT-CG 23226 |||||||| ||| ||||| ||||| || ||||| ||| || | ||| ||| || Sbjct 423334 CCCGTCTCCGTCTGAGACTCTATGATGGCGTACCACACCTGCTGTGCCTTAAC-CGTACG 423276 Query 23227 CACGTACCTGCCTTCTT 23243 | | | ||||||||| Sbjct 423275 CTTGACCTTGCCTTCTT 423259 >seq257 Length=13053552 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 5262920 AAAGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCC 5262979 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | | || | ||||| | ||| |||||| || ||| | || || || Sbjct 5262980 CAGTGACACTATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCCCCTGA 5263039 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| || ||||| || || ||||||||||| | || | ||| || Sbjct 5263040 CCAGCAGCGTCTGATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGTACCCTATCCGACTA 5263099 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || || ||||| || || Sbjct 5263100 CAACATCCAGAAGGAATCCACCCTCCATCTTGTGCT 5263135 >seq5865 Length=143300 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| | || || || | Sbjct 26033 CATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAG 25974 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || |||||| |||||| | || || ||||| Sbjct 25973 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25914 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| ||||||| | || || ||| || || Sbjct 25913 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCCAACCCTGTCCGACTACAA 25854 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || ||||| || ||||| || | |||||||| || Sbjct 25853 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGG 25806 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| | || || || | Sbjct 25805 CATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAG 25746 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || |||||| |||||| | || || ||||| Sbjct 25745 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25686 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| ||||||| || || ||| || || Sbjct 25685 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 25626 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || ||||| || ||||| || | |||||||| || Sbjct 25625 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGG 25578 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| || || || || || |||||| | || || || | Sbjct 26264 AAAGATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGC 26205 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | ||||| | || |||||| |||||| | || || || Sbjct 26204 AAGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGA 26145 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | | || ||||||||||| ||| ||||||| || || ||| || Sbjct 26144 CCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 26085 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| || ||||| || ||||| || | |||||||| || Sbjct 26084 CAACATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGG 26034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| | || || || | Sbjct 25577 CATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAG 25518 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || |||||| |||||| | || || ||||| Sbjct 25517 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25458 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| ||||||| | || || ||| || || Sbjct 25457 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 25398 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || ||||| || Sbjct 25397 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCT 25365 >seq5361 Length=1636355 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||||| ||| |||| ||||| | | |||||||| || || || | || || Sbjct 1219630 GATGAACCACTATTGAAAGAAAATCCAAGACGGTTTGTCATTTTCCCTATCCAGTACCCT 1219689 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||||| ||||| |||||||| ||||| | ||||| || ||||| || || |||||| Sbjct 1219690 GACATCTGGAAGATGTACAAGCAGGCACAGGCATCATTCTGGACAGTGGAGGAAGTA 1219746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445727869066800