Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3182 114 3e-20 >seq3182 Length=3053334 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| || || || ||||| || ||| |||| ||||||||||||||| Sbjct 791308 GTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTTTCTGG 791367 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| |||||| || ||||||| || || | |||||||||| | || || || Sbjct 791368 CTGAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCAGAGAT 791427 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAA 102075 || || || || | |||||||| ||| || |||| || Sbjct 791428 GAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAA 791465 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| || || || ||||| || ||| |||| ||||||||||||||| Sbjct 884523 GTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTTTCTGG 884582 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| |||||| || ||||||| || || | |||||||||| | || || || Sbjct 884583 CTGAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCAGAGAT 884642 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAA 102075 || || || || | |||||||| ||| || |||| || Sbjct 884643 GAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAA 884680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989496324403825