Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5361 91.5 2e-13 >seq5361 Length=1636355 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 ||||| ||||||||||| |||||||||| ||||| || ||||| |||||||||||| | Sbjct 1219745 ACTTCCTCCACTGTCCAGAATGATGCCTGTGCCTGCTTGTACATCTTCCAGATGTCAGGG 1219686 Query 36716 TATTGAATTGGAAAAATAACAAATCTATTTTGATTTT-TTGCAAGGATTGGTTC 36768 || || || || ||||| ||||| | || |||||| || ||| | |||||| Sbjct 1219685 TACTGGATAGGGAAAATGACAAACCGTCTTGGATTTTCTTTCAA-TAGTGGTTC 1219633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658115909188600