Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2049 129 5e-25 >seq2049 Length=84106 Score = 129 bits (142), Expect = 5e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| ||| ||||||| || || || |||||||||||||||||||| || || Sbjct 10019 AGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 10078 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || || |||||||| | || | ||||||||| ||||| |||||||| || | | Sbjct 10079 ACGCCCAGACCCATGTCTCCCGATCGCTGGTACAGTTGGCACGACAGCTCACCGTCACAC 10138 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC 21166 ||||||||||| |||| | || || || || || |||||| | | ||||| || Sbjct 10139 ACGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCTGC 10194 Score = 114 bits (126), Expect = 1e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| ||||||| || || || |||||||||||||||||||| || || Sbjct 9500 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 9559 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || || |||||||| | | | ||||||||| ||||| |||||||| || | | Sbjct 9560 ACGCCCAGACCCATGTCTCCCGGTCGCTGGTACAGTTGGCACGACAGCTCACCGTCACAC 9619 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC 21166 |||||||||| |||| | || || || || || |||||| | | ||||| || Sbjct 9620 GCGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCTGC 9675 Score = 100 bits (110), Expect = 2e-16 Identities = 123/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 ||||||| ||||| | |||||||||||||| |||||||| |||||||| || ||||| Sbjct 12659 TGTACTCTGCCCCGTAGTGTCTCCACTGGAAGCCGTACACTGGCCCCAGGTCTCCCTCCT 12718 Query 21340 GGCGGTCCCCGAAGCC-CTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATT 21398 |||| | |||||| ||||| ||| ||| | || || |||| |||||||| || Sbjct 12719 CTCGGTGCTGGAAGCCGCTGCG-GTCCAGGAAGTCCCGAGAGCCGTTGGCGTCCCAGATC 12777 Query 21399 TTTACGCCGCGGCGC-GACAGTTCGGTGGAGTCGGTGGAGCCC 21440 || ||||| | | | ||||| || ||| || |||||||||| Sbjct 12778 TTCACGCC-CTTCTCAGACAGCTCCTTGGCGTTGGTGGAGCCC 12819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427739948509200