Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3182 105 5e-18 >seq3182 Length=3053334 Score = 105 bits (116), Expect = 5e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| ||||| || ||| || | || ||||| |||||||| |||| ||||||||| Sbjct 791311 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTTTCTGGCTG 791370 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| | || ||||| || | | || ||||| ||| | || ||| | || || Sbjct 791371 AAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCAGAGATGAG 791430 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 || || |||||||||||||| || || |||| | ||| | | |||||||| Sbjct 791431 GGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAAGCACCTTGTCAACAAACC 791483 Score = 105 bits (116), Expect = 5e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| ||||| || ||| || | || ||||| |||||||| |||| ||||||||| Sbjct 884526 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTTTCTGGCTG 884585 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| | || ||||| || | | || ||||| ||| | || ||| | || || Sbjct 884586 AAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCAGAGATGAG 884645 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 || || |||||||||||||| || || |||| | ||| | | |||||||| Sbjct 884646 GGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAAGCACCTTGTCAACAAACC 884698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356203577856745