Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq257 100 3e-16 seq5865 93.3 4e-14 >seq257 Length=13053552 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||| ||||| || |||||||||| ||||| || || || ||||| |||||| Sbjct 5263078 TCTTCCAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTG 5263019 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | || | ||||| ||||||||||||||| ||| | Sbjct 5263018 TCCTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATG 5262959 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| || ||||| Sbjct 5262958 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 5262924 >seq5865 Length=143300 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || |||||||| || ||||| || ||| || |||| Sbjct 25589 ACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 25648 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || ||||| |||||| | ||||| || || || ||||||||||| Sbjct 25649 ATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTT 25708 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | |||||| | | ||||||||||| ||| | Sbjct 25709 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGAT 25768 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 25769 GGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || | ||| | || ||||| || || ||||| || ||| Sbjct 25349 GCCCCCTCTAAGGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 25408 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| || ||||| |||||| | ||||| || || || Sbjct 25409 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGG 25468 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| || || | | || | |||||| | | |||||| Sbjct 25469 AATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCAC 25528 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| || || | || || ||||| || ||||| Sbjct 25529 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGT-GCTCG 139607 ||||| || | ||| | || |||||||| || ||||| || ||| || || | | Sbjct 25817 ACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTTGGACC 25876 Query 139608 AGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 | ||||| ||||| || ||||| |||||| | ||||| || || || |||||||||| Sbjct 25877 A-TCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTT 25935 Query 139668 TGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 |||| ||| || || | | || | |||||| | | ||||||||||| ||| | Sbjct 25936 TGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGA 25995 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 25996 TGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 26032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || |||||||| || ||||| || ||| || |||| Sbjct 26045 ACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 26104 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || ||||| |||||| | ||||| || || || ||||||||||| Sbjct 26105 ATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTT 26164 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | |||||| | | ||||||||||| ||| | Sbjct 26165 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGAT 26224 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || || || || ||||| Sbjct 26225 GGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 26260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496021121468000