Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3182 127 3e-24 seq5361 107 3e-18 >seq3182 Length=3053334 Score = 127 bits (140), Expect = 3e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 || || ||||||| || || || || |||||||| ||||| ||||| || || || || Sbjct 791468 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 791409 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 ||||| || || || || ||||| || || | ||| || ||||| || ||||| |||||| Sbjct 791408 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 791349 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC 50117 || ||||| || ||||| || || || || ||||||||||| | || ||| || Sbjct 791348 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 791296 Score = 127 bits (140), Expect = 3e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 || || ||||||| || || || || |||||||| ||||| ||||| || || || || Sbjct 884683 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 884624 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 ||||| || || || || ||||| || || | ||| || ||||| || ||||| |||||| Sbjct 884623 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 884564 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC 50117 || ||||| || ||||| || || || || ||||||||||| | || ||| || Sbjct 884563 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 884511 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCT-TCTTG--AGACATAACTCCCATTT 49669 ||||||||||| ||||||| | || ||||||| | || ||||||||| ||||| Sbjct 792138 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 792079 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 ||||||| || || |||||||| ||||| || || || || || |||| || || || | Sbjct 792078 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 792019 Query 49730 CCATGAAATCAAACGGATT 49748 ||||||| ||||| || || Sbjct 792018 CCATGAAGTCAAAGGGGTT 792000 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCT-TCTTG--AGACATAACTCCCATTT 49669 ||||||||||| ||||||| | || ||||||| | || ||||||||| ||||| Sbjct 885330 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 885271 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 ||||||| || || |||||||| ||||| || || || || || |||| || || || | Sbjct 885270 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 885211 Query 49730 CCATGAAATCAAACGGATT 49748 ||||||| ||||| || || Sbjct 885210 CCATGAAGTCAAAGGGGTT 885192 >seq5361 Length=1636355 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || |||||||| || || || |||||| | | |||||| ||||| || || | ||| || Sbjct 1221673 TCATCTCTACTGATAAGCTCATTGGAATAGGAGAGTCCAGGCATCAGACCCCTCTTCTTC 1221614 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| | |||| ||||| |||||||| || ||||| || || ||||| ||||| || Sbjct 1221613 AGCCAGTAGATGGCAGCAAAGGACCCAGAGAAAAAGATGCCCTCCACTGCTGCAAATGCC 1221554 Query 50104 ACAAGTCTCTCTCC 50117 ||||||||||| || Sbjct 1221553 ACAAGTCTCTCCCC 1221540 Score = 104 bits (114), Expect = 3e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 |||||| ||||||||||| |||||||||| ||||| || ||||| |||||||||||| | Sbjct 1219746 TACTTCCTCCACTGTCCAGAATGATGCCTGTGCCTGCTTGTACATCTTCCAGATGTCAGG 1219687 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||| |||||||| ||||| | |||||||| Sbjct 1219686 GTACTGGATAGGGAAAATGACAAACCGTCTTGGATTT 1219650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718206714640600