Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3182 87.8 2e-12 >seq3182 Length=3053334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || || || || || | || ||||| ||||| || |||||||||||||| || ||||| Sbjct 791471 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGC 791412 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || || || || | || ||||| | || | || || | ||| || || | ||| Sbjct 791411 TCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCA 791352 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 ||||| || || || || || ||||| || |||||||| || Sbjct 791351 AATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGC 791311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || || || || || | || ||||| ||||| || |||||||||||||| || ||||| Sbjct 884686 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGC 884627 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || || || || | || ||||| | || | || || | ||| || || | ||| Sbjct 884626 TCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCA 884567 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 ||||| || || || || || ||||| || |||||||| || Sbjct 884566 AATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGC 884526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479686533511000