Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq3182 84.2 2e-11
>seq3182
Length=3053334
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701
|| || || || || | || ||||| ||||| || |||||||||||||| || |||||
Sbjct 791471 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGC 791412
Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761
|| || || || || | || ||||| | || | || || | ||| || || | ||
Sbjct 791411 TCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCA 791352
Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802
||||| || || || || || ||||| || |||||||| ||
Sbjct 791351 AATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGC 791311
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701
|| || || || || | || ||||| ||||| || |||||||||||||| || |||||
Sbjct 884686 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGC 884627
Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761
|| || || || || | || ||||| | || | || || | ||| || || | ||
Sbjct 884626 TCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCA 884567
Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802
||||| || || || || || ||||| || |||||||| ||
Sbjct 884566 AATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGC 884526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478547431980600
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |