Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3182 118 1e-21 seq5361 93.3 6e-14 >seq3182 Length=3053334 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 || || ||||||| || || || || |||||||| ||||||||||| || || | || Sbjct 791468 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 791409 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 ||||| || || || || ||||| || || | ||| || ||||| || || || |||||| Sbjct 791408 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 791349 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 42222 || ||||| || ||||| || || || || |||||||||| | || ||| || Sbjct 791348 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 791296 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 || || ||||||| || || || || |||||||| ||||||||||| || || | || Sbjct 884683 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 884624 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 ||||| || || || || ||||| || || | ||| || ||||| || || || |||||| Sbjct 884623 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 884564 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 42222 || ||||| || ||||| || || || || |||||||||| | || ||| || Sbjct 884563 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 884511 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCTTG--AGACATAACTCCCATTT 41774 ||||||||||| |||||| | || ||| ||| | || ||||||||| ||||| Sbjct 792138 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 792079 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 ||||||| || || |||||||| ||||| || || ||||| || |||| || || || | Sbjct 792078 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 792019 Query 41835 CCATGAAATCAAACGGATT 41853 ||||||| ||||| || || Sbjct 792018 CCATGAAGTCAAAGGGGTT 792000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCTTG--AGACATAACTCCCATTT 41774 ||||||||||| |||||| | || ||| ||| | || ||||||||| ||||| Sbjct 885330 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 885271 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 ||||||| || || |||||||| ||||| || || ||||| || |||| || || || | Sbjct 885270 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 885211 Query 41835 CCATGAAATCAAACGGATT 41853 ||||||| ||||| || || Sbjct 885210 CCATGAAGTCAAAGGGGTT 885192 >seq5361 Length=1636355 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||||||||| || | || |||||| | | |||||| ||||| || || | ||| || Sbjct 1221673 TCATCTCTACTGATAAGCTCATTGGAATAGGAGAGTCCAGGCATCAGACCCCTCTTCTTC 1221614 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| | || | ||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 1221613 AGCCAGTAGATGGCAGCAAAGGACCCAGAGAAAAAGATGCCCTCCACTGCTGCAAATGCC 1221554 Query 42209 ATAAGTCTCTCTCC 42222 | ||||||||| || Sbjct 1221553 ACAAGTCTCTCCCC 1221540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671081188405400