Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3182 84.2 3e-11 >seq3182 Length=3053334 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 125425 GACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCT 125484 || |||| || || || || || ||||||||||| || || || ||||| |||| | Sbjct 791303 GAGTGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTT 791362 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTC 125544 | ||||| |||||| | || || ||||| || || || | || ||| |||| Sbjct 791363 TCTGGCTGAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCA 791422 Query 125545 GAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| |||||||| ||||||||||||||| Sbjct 791423 GAGATGAGGGCCTGCACTGTGACTTTGCC 791451 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 125425 GACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCT 125484 || |||| || || || || || ||||||||||| || || || ||||| |||| | Sbjct 884518 GAGTGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTT 884577 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTC 125544 | ||||| |||||| | || || ||||| || || || | || ||| |||| Sbjct 884578 TCTGGCTGAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCA 884637 Query 125545 GAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| |||||||| ||||||||||||||| Sbjct 884638 GAGATGAGGGCCTGCACTGTGACTTTGCC 884666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740995144695400