Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5865 95.1 9e-15 >seq5865 Length=143300 Score = 95.1 bits (104), Expect = 9e-15 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || |||||||| ||| || | | | ||||| | || Sbjct 26058 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 26117 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | ||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 26118 TTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTG 26177 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||||| || || || | ||| ||||| || || || Sbjct 26178 GCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTG 26237 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTGAA---AATAAAATTTTAATA 15385 || || || ||||| || ||||| ||| || | ||||||| |||| Sbjct 26238 AGGGTCTTCACAAAGATCTGCATCTTTCAACCTTAAAAAATTTAAATA 26285 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || |||||||| ||| || | | | ||||| | || Sbjct 25602 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 25661 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | ||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 25662 TTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTG 25721 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||||| || || || | ||| ||||| || || || Sbjct 25722 GCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTG 25781 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 25782 AGGGTCTTCACGAAGATCTGCAT 25804 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || |||||||| ||| || || | ||||| | || Sbjct 25830 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTTGGACCATCTTCCAGCTGC 25889 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | ||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 25890 TTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTG 25949 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||||| || || || | ||| ||||| || || || Sbjct 25950 GCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTG 26009 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 26010 AGGGTCTTCACGAAGATCTGCAT 26032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362148676782015