Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2049 141 6e-29 >seq2049 Length=84106 Score = 141 bits (156), Expect = 6e-29 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||||||||| ||| | | ||||||||||| |||||||| || || ||||| Sbjct 12651 CATGTCTGTGTACTCTGCCCCGTAGTGTCTCCACTGGAAGCCGTACACTGGCCCCAGGTC 12710 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 ||| || || | ||||| ||||| || |||| ||||| | || || |||||||| Sbjct 12711 TCCCTCCTCTCGGTGCTGGAAGCCGCTGCGGTCCAGGAAGTCCCGAGAGCCGTTGGCGTC 12770 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| || |||||||| || ||||| |||| ||| ||||| || Sbjct 12771 CCAGATCTTCACGCCCTTCTCAGACAGCTCCTTGGCGTTGGTGGAGCC 12818 Score = 114 bits (126), Expect = 9e-21 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | |||||| Sbjct 10034 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGACCCATG 10093 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || ||| || | |||||| || || ||||| ||||| |||| | |||||||||||| || Sbjct 10094 TCTCCC-GATCGCTGGTACAGTTGGCACGACAGCTCACCGTCACACACGTAAAACTGGCA 10152 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCT 25665 || | | |||||| || || || || ||| || |||| Sbjct 10153 CAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCT 10192 Score = 105 bits (116), Expect = 5e-18 Identities = 120/160 (75%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | |||||| Sbjct 9515 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGACCCATG 9574 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | |||| | |||||| || || ||||| ||||| |||| | | |||||||||| || Sbjct 9575 T-CTCCCGGTCGCTGGTACAGTTGGCACGACAGCTCACCGTCACACGCGTAAAACTGGCA 9633 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCT 25665 || | | |||||| || || || || ||| || |||| Sbjct 9634 CAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCT 9673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340108934372295