Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1950 86.0 4e-12 >seq1950 Length=44673 Score = 86.0 bits (94), Expect = 4e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 21177 GACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGA 21236 || ||| | || ||| | || ||||| ||||||||||||| || | | | || ||| Sbjct 24945 GATAAGAACACTGGCGAGCAAAAAGAAAAAACAGAATGGCACCGTGTTGCTGTCTTTGGA 25004 Query 21237 AAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGG 21296 || || ||||||||||| |||| || |||| ||||| ||||| || ||||| || || Sbjct 25005 AAGCTAGCTGAAATTGCCGGTGAATACCTACGCAAAGGCTCTCAAGTTTACATTGAGGGT 25064 Query 21297 AAACTTAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATT 21356 || | |||| ||||| ||| | | | | ||| ||| | ||||| || |||||| Sbjct 25065 AAGTTGCAAACGCGTAAATGGCAAAACAAAGATGGTCAAGATCAGTACACTACAGAAATT 25124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303209644379715