Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq721 87.8 9e-13 seq2607 84.2 1e-11 seq5179 82.4 4e-11 seq4367 82.4 4e-11 seq3371 82.4 4e-11 >seq721 Length=3840069 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 3079114 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 3079055 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 3079779 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 3079720 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 3080585 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 3080644 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 3080999 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 3080940 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 3081664 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 3081605 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 3082470 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 3082529 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 3083332 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 3083273 Score = 84.2 bits (92), Expect = 1e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||| |||||||||||| |||||||||||||| |||| Sbjct 3086934 ATCGAACCCGCGACCTTCGCGTTATTGGCACGACGCTCTAACCAACTGAGCTAACCGGCC 3086875 >seq2607 Length=1285138 Score = 84.2 bits (92), Expect = 1e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 475998 ATCGAACCCGCGACCTTCGCGATATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 476057 >seq5179 Length=5122445 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1326619 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1326678 Query 11528 CC 11529 || Sbjct 1326679 CC 1326680 >seq4367 Length=4401091 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 974868 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 974809 Query 11528 CC 11529 || Sbjct 974808 CC 974807 >seq3371 Length=3225571 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1837763 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1837822 Query 11528 CC 11529 || Sbjct 1837823 CC 1837824 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1841242 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1841301 Query 11528 CC 11529 || Sbjct 1841302 CC 1841303 Lambda K H 0.641 0.410 0.925 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261469162420540