Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq6219 140 5e-28 seq5506 111 2e-19 seq4680 84.2 3e-11 >seq6219 Length=4626575 Score = 140 bits (154), Expect = 5e-28 Identities = 197/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8699 CCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCC 8758 |||||||||||| | || || || ||| | | || || ||||| ||| || ||| Sbjct 4458799 CCTTTGACGTTGTTGCACACCAGTCGCTGCAGCGAGGCGCTGTTGACAATCTGGAAGCCC 4458740 Query 8759 ACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATG 8818 || || ||||| |||||||| |||||||| ||||||| |||||| ||| ||| | Sbjct 4458739 ACCGGGCCACCGAACGTGCTGGGCTTCCAGTACTCCGGGGAACAGATGGGGTTACCCAGG 4458680 Query 8819 AGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTG 8878 |||||||| || || | || || |||| ||| | ||| |||| || ||||| |||||| Sbjct 4458679 AGGCCTTTCAGCGAGTAGGGGGCACCCATCTCCACCATGGTCTCCCCAAAGATTGCGTTG 4458620 Query 8879 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAA 8938 | |||||||| ||||||| | || | ||||| |||||| || || | || ||||| Sbjct 4458619 GTGCGGGGCTTCTCCACCATCAGGCCAGGGTACAGCTCCACGGCATCCACGTGGCCGTAC 4458560 Query 8939 AGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 | || || | ||| || || || |||| |||| Sbjct 4458559 ATCTCCTCCAGCTGGGCCGCCATCTCGGTTTCACCTG 4458523 Score = 131 bits (144), Expect = 2e-25 Identities = 176/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | ||||| || |||||||| || ||| || || ||| | ||||| Sbjct 4456528 TCACCGATGAGAATGAGACGTGTGGTCTGGAAGAGTCTCTCATCGTCCCAGTGAGGATGG 4456469 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | || || || || ||||| | |||||| || | ||||||||||| ||||||||| Sbjct 4456468 ACCTCTTGGAGCACCTCACACACACGGTTGTGCTCACGCAGCCAGATAGTGGCGTACATC 4456409 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || || |||||||||||||| || ||||| || |||||||| | |||| | |||||| Sbjct 4456408 ATCAGGCCAGGCACCAGGCCGAACGCCTCGTGGCCGACAGCGAAACGCCGAGACTCGGGC 4456349 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | || || ||| ||||| ||| || || ||||| ||| || |||| |||| Sbjct 4456348 ACGTGAGGTGGGTAGTGCATGTCCACACCAACTTCGCTGACCAGGGGAGGGTACACTTCA 4456289 Query 9850 CCGTC 9854 || || Sbjct 4456288 CCATC 4456284 >seq5506 Length=141892 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || ||||| |||||||||||||| || | || || |||||| ||| ||| || ||| Sbjct 66142 CCACCGAATGTGCTGGGTTTCCAATACTCGGGAGAACAGATGGGATTCCCCAAAAGACCT 66083 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || | || |||||||| |||| ||| | |||||||| || || ||||| ||| || Sbjct 66082 TTCAAAGAGAACGGAGCTCCCATCTCCACCATGCTCTCCCCAAATATGGCCCCGGGCCGA 66023 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 | ||| |||| || | || | ||| ||||||| ||| |||||||| ||||| || Sbjct 66022 GTCTTCTCCAGCAGCAGACCAGGGTAGAACTCCAGAGCATCGATGTCCCCGTACAG 65967 >seq4680 Length=2975 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/208 (69%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || |||| |||||| || | |||||| || ||||||||||| ||| || |||||| Sbjct 922 CCAATAACGATGAGCCGGGCGGTCTGGAAGAGTTGTTCGTCGTCCCAGGTGGGGTGTTCT 981 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 || ||| | || || | | |||||| || | ||||| | || || ||||| || Sbjct 982 CGGAGCAGGATGTCACAGATGCGGTTGTGCTCGCGCAGCCATAGGGTGGCATACATACTG 1041 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTC---GGGC 9789 || ||||||| || ||||| |||| || |||| ||||| | | | || |||| Sbjct 1042 AGCCCAGGCAGGAGCCCAAACACCTCCTGCCCGATCGCCAGTC---TGTGCTCCGGGGGC 1098 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCT 9817 ||| ||| || ||| |||||| |||| Sbjct 1099 ACTGTGGGTGGGTAGCTCATGTTAACCT 1126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708463556887600