Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5865 129 5e-25 seq257 105 6e-18 >seq5865 Length=143300 Score = 129 bits (142), Expect = 5e-25 Identities = 173/237 (73%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | ||| || || || || | ||| || ||| | Sbjct 26034 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 26093 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || || | ||||| || || ||||| ||||| ||| Sbjct 26094 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 26153 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGAC 94959 || ||||||||||| | || || ||||||||| | | ||||| || || || || Sbjct 26154 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTTGCCTCCAC 26212 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAAC 95016 |||| |||||||| || || || || || ||||||||||||||||| ||| |||| Sbjct 26213 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT-CTTTCAAC 26268 Score = 127 bits (140), Expect = 2e-24 Identities = 172/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||||| || ||||| | |||| ||||| ||| | ||| || ||||| || | ||| || Sbjct 25343 TTACAAGCCCCCTCTAAGGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTA 25402 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 ||| || ||| ||| |||||||| || || | ||||| || || ||||| || Sbjct 25403 GTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTC 25462 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||| ||||| ||||||||||| | || || ||||||||| | | ||||| || || Sbjct 25463 TGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTTG 25521 Query 94954 -GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || |||| |||||||| || || || || || ||||| ||||||||||||| Sbjct 25522 CCTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATGC 25578 Score = 127 bits (140), Expect = 2e-24 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | ||| || || || || | ||| || ||| | Sbjct 25806 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25865 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | |||||| ||| |||||||| || || | ||||| || || ||||| ||||| | Sbjct 25866 A--GGGTTGGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGG 25923 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCG 94957 |||| ||||||||||| | || || ||||||||| | | ||||| || || || Sbjct 25924 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTTGCCTCC 25982 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || |||| |||||||| || || || || || ||||| ||||||||||||| Sbjct 25983 ACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATGC 26034 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | ||| || || || || | ||| || ||| | Sbjct 25578 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25637 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || || | ||||| || || ||||| ||||| ||| Sbjct 25638 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25697 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGAC 94959 || ||||||||||| | || || ||||||||| | | ||||| || || || || Sbjct 25698 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTTGCCTCCAC 25756 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| |||||||| || || || || || ||||| ||||||||||||| Sbjct 25757 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATGC 25806 >seq257 Length=13053552 Score = 105 bits (116), Expect = 6e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || |||||||| || | ||| || ||| |||| || || ||| |||| ||| || | Sbjct 5263120 GTGGATTCCTTCTGGATGTTGTAGTCGG--ATAGGGTACGACCATCTTCCAACTGCTTAC 5263063 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || | ||||| | | ||||| || || || || || |||||||| | ||||| |||| Sbjct 5263062 CGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATTTTAGCCT 5263003 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 |||| | | ||||||| | | || || |||| |||||||| || ||||| || | Sbjct 5263002 TGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 5262943 Query 94989 TTTTCACAAAGATCTGCATGCTTACA 95014 | ||||| ||||||||||| ||||| Sbjct 5262942 TCTTCACGAAGATCTGCATCTTTACA 5262917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252450829400