Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq1950 109 2e-19 >seq1950 Length=44673 Score = 109 bits (120), Expect = 2e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 32941 TTCGGTAGTGAACCGATTCTGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCC 33000 ||| |||||| || ||| || ||| || || |||||||| | || |||| || || Sbjct 25121 TTCTGTAGTGTACTGATCTTGACCATCTTTGTTTTGCCATTTACGCGTTTGCAACTTACC 25062 Query 33001 TTCAAGATAAACCTCAGAGCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCC 33060 |||| ||||| | ||||||||| || || || || | ||||||||| || || || || Sbjct 25061 CTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTCACCGGCAATTTCAGCTAGCTTTCC 25002 Query 33061 GCTCATCACCACACGGTGCCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCG 33120 | | ||||||||||| || || | || |||||||||||||| || |||||| Sbjct 25001 AAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTTTTGCTCGCCAGTGTTCTTATCTTT 24942 Query 33121 CCATTGTTCTGACGTAGCTATTGTCAGGTTAGC 33153 ||| |||||| || || | || | |||||| Sbjct 24941 CCAGCTTTCTGATGTTGCCAACGTAAAGTTAGC 24909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149946086072260