Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3182 123 3e-23 seq5361 98.7 1e-15 >seq3182 Length=3053334 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 || || ||||||| || || || || |||||||| ||||| ||||| || || || || Sbjct 791468 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 791409 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 ||||| || || || || ||||| || || | ||| || ||||| || ||||| || ||| Sbjct 791408 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 791349 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC 33461 || ||||| || ||||| || || || ||||||||||||| | || ||| || Sbjct 791348 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 791296 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 || || ||||||| || || || || |||||||| ||||| ||||| || || || || Sbjct 884683 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 884624 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 ||||| || || || || ||||| || || | ||| || ||||| || ||||| || ||| Sbjct 884623 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 884564 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC 33461 || ||||| || ||||| || || || ||||||||||||| | || ||| || Sbjct 884563 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 884511 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTG--AGACATAACTCCCATTT 33013 ||||||||||| |||||| | || ||||||| | || ||||||||| ||||| Sbjct 792138 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 792079 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 ||||||| || || |||||||| ||||| || || || || || |||| || || || | Sbjct 792078 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 792019 Query 33074 CCATGAAATCAAACGGATT 33092 ||||||| ||||| || || Sbjct 792018 CCATGAAGTCAAAGGGGTT 792000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTG--AGACATAACTCCCATTT 33013 ||||||||||| |||||| | || ||||||| | || ||||||||| ||||| Sbjct 885330 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 885271 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 ||||||| || || |||||||| ||||| || || || || || |||| || || || | Sbjct 885270 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 885211 Query 33074 CCATGAAATCAAACGGATT 33092 ||||||| ||||| || || Sbjct 885210 CCATGAAGTCAAAGGGGTT 885192 >seq5361 Length=1636355 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 |||||| ||||||||||| |||||||||| ||||| || ||||| |||||||||||| Sbjct 1219746 TACTTCCTCCACTGTCCAGAATGATGCCTGTGCCTGCTTGTACATCTTCCAGATGTCAGG 1219687 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || ||||| |||||||| ||||| | |||||||| Sbjct 1219686 GTACTGGATAGGGAAAATGACAAACCGTCTTGGATTT 1219650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622893354001400