Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5865 100 3e-16 >seq5865 Length=143300 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| || || | || || || | |||||| | || | || || Sbjct 26263 AAGATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCA 26204 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||| ||| | ||||| ||||| ||||||||||| || || || || Sbjct 26203 AGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGAC 26144 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | || | || ||||| || || ||||||| | | | | |||||| Sbjct 26143 CAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 26084 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || ||||| || ||| |||| ||||||||| | || || ||||| Sbjct 26083 AACATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGG 26034 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| | || | || ||| | Sbjct 26032 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25973 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || || || || || Sbjct 25972 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 25913 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || ||||| || || ||||||| | || | | |||||| ||| Sbjct 25912 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCCAACCCTGTCCGACTACAAC 25853 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || ||| |||| ||||||||| | || || ||||| Sbjct 25852 ATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGG 25806 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| | || | || ||| | Sbjct 25576 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25517 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || || || || || Sbjct 25516 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 25457 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || ||||| || || ||||||| | | | | | |||||| ||| Sbjct 25456 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 25397 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || ||| |||| ||||| ||| | |||||||| || Sbjct 25396 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCCTTAGAGGGGG 25350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| | || | || ||| | Sbjct 25804 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25745 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || || || || || Sbjct 25744 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 25685 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || ||||| || || ||||||| | | | | |||||| ||| Sbjct 25684 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 25625 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || ||| |||| ||||||||| | || || ||||| Sbjct 25624 ATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGG 25578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478621025618800