Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1943 127 5e-24 >seq1943 Length=432286 Score = 127 bits (140), Expect = 5e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 |||||| || | |||| |||||||| || || |||| ||||| || ||||| || ||| Sbjct 423288 GCACAGCAGGTGTGGTACGCCATCATAGAGTCTCAGACGGAGACGGGCACACCTTACATG 423347 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | || |||||| | |||||||||||| ||| |||||| ||||||| ||||| || Sbjct 423348 CTCTATAAAGATGCCTGCAACCGCAAGAGCAATCAGCAGAACCTTGGCACAATCAAGTGC 423407 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||| ||||| || |||||| ||||||||||| Sbjct 423408 AGCAATCTATGCACAGAGATTGTTGAATACACC 423440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303238124907530