Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_007808.1 Length=49639 Score E Sequences producing significant alignments: (Bits) Value seq204 423 6e-114 seq141 127 6e-25 seq115 98.7 3e-16 >seq204 Length=1493 Score = 423 bits (468), Expect = 6e-114 Identities = 877/1295 (68%), Gaps = 23/1295 (2%) Strand=Plus/Minus Query 36583 CATAGCGTTCAGCACAGGCTCCAGCAGTTCTACTTCGAACGTAGTGACCTTCTCTTGGAA 36642 ||| || ||||| ||||| || || || | || || | || | |||||||| || Sbjct 1435 CATGGCATTCAGTGTGGGCTCTAGGAGCTCAATCTCAAAGCTGGTAATTTTCTCTTGAAA 1376 Query 36643 GATTCGACCAGCAGCATTACCGAGCTGTTGTACTTCAAATGCAGTCTTTTCACCAGGAGT 36702 ||| || ||||||||||| | | || ||||| || || ||||| ||||| | || Sbjct 1375 GATACGGCCAGCAGCATTTTGCAACGACTGAACTTCGAAGGCTGTCTTCTCACCTGCTGT 1316 Query 36703 ACGAATGCCCATAGCCTCACGAGGAGCGCCAGCATATAGCTCCATACGATCTTCTAGCAT 36762 ||||| |||||||||||||| || ||||||| || || ||||| ||||| || Sbjct 1315 GCGAATCCCCATAGCCTCACGTGGTGCGCCAGAGTACAGTTCCATTTTTTCTTCAAGAGA 1256 Query 36763 TTGAATTTGGTTGTCTGCGTTGATGATGTAGTTAACGTTCTTGGCAATCTCTTGCACATC 36822 ||||| ||| || || ||| ||| | ||||||| | | ||| || || Sbjct 1255 GCCAATTTCGTTAGACGCTGCTATAATGCCGTTCAGGTTCTTGCCTAGCTCAGCTACGTC 1196 Query 36823 ACCACCTTGGTCCAGATGAATCTCCGCACCAGGGCCCCATACAAACTCCTCTACCTCACC 36882 |||| | ||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 1195 ACCATTCTCGTCGGTGTGTATCTCAGCACCTGGGCCCCATACAAACTCTTCTACCTCACC 1136 Query 36883 AATAATCTTCAGCGGGGGTTGAATG-ATAAGATCGACAGCATCAGCCTTAGCATTCTCAA 36941 |||| ||||| || || | | ||| || | || ||||| ||| ||||||| Sbjct 1135 CTTAATGACAAGCGGTGGGTGCACACACAAG-TCCATTGCGTCAGCTTTAAGGTTCTCAA 1077 Query 36942 GGTGGTCAATTCGATATTGCATACCTACCAGATTGTCCAAAGGCCCCATAGCCCACAGAT 37001 |||||||||| || ||||||||||| |||| ||||||||||| |||||||||||||| | Sbjct 1076 GGTGGTCAATACGGTATTGCATACCAACCAAGTTGTCCAAAGGTCCCATAGCCCACAGGT 1017 Query 37002 TGTCTGGGCGGAATCTCCAACCAACATGGTAAATTGGAGCAGAGCCAAACCAAGTAGGAA 37061 | || || || | ||| |||||||| | | || || ||||| ||| | Sbjct 1016 TATCAGGTCGTGTACGCCACCCAACATGACATAAGGGGGCTTTACCAAAGTAAGACTTGA 957 Query 37062 TAGACTCATTACGGACTTCAGTAGACCTATCTACTACAGTGATAATTCTATTGGTTTGCA 37121 ||| ||| | | ||| || | | || | | || || | | || | | || Sbjct 956 TAGGCTCTTCCCTAACTACATGGCAACGGTCAAAGATTGTTATGACTACGTTTGACTTCA 897 Query 37122 GTTCACCAGTTTCTTTATCGTGGTAGTCGCCATAGAACTCCAGAATTTCTACCCAGTCGC 37181 |||||||||||||| | ||||||||||||||||||||| || || ||||| |||| Sbjct 896 GTTCACCAGTTTCTGTGCTGTGGTAGTCGCCATAGAACTCAAGTATCTCTACATAGTCAG 837 Query 37182 TCATATAGTATTCGTACAGGTTACCGAATCCATCTACATCGAAT--CCAGCGGCCTTATC 37239 ||||||||||| ||||| || ||||| || ||| |||| || | |||||||| Sbjct 836 ATTGGTAGTATTCGTAGAGGTTGCCAAATCCGTCCACA--GAATAGCCCTCAGCCTTATC 779 Query 37240 GAAGTCCTCTACAGAATAACCCCCCAGATGCCTGCAAATCTCTTCTCTACG------CTT 37293 |||||| |||| |||||| || || | | | || | | ||||| | Sbjct 778 GAAGTCTTCTATGCTATAACCACCTAGGACCTTCCTCATAGTTGCCCTACGGGCCGCATA 719 Query 37294 CAAAGCCTCTAGCCAATAGGATTGCTCGGGCTCATCTTGAGCGAGCCTCATAAGCTCTCC 37353 | |||| ||| | | |||| | || | | || | || | | || | ||| || Sbjct 718 CGAAGC--ATAG---AAGGCATTGTTAGGCCAC-TCCTCTGCCATCTTCTGTATCTCACC 665 Query 37354 CTTGGTCTTTACAGAGCGTACAATTTTAAAGGTGTCAGAAATGGAGGTTGCAAGTGGGTT 37413 || || | | |||||||| || || | ||| || || | ||| |||| Sbjct 664 AACAGTTTTGATACTTCGTACAATCTTGAATGACTCATCAAAGGTTGAGGCAGTGGGGTC 605 Query 37414 AAACACAATATCCAGTGGGCTAATACGTACAAGCCGTGGGCCAATGTAATCAGGTACCAA 37473 ||||||||| |||| || |||||| | | || || || ||| || || | | || Sbjct 604 AAACACAATGTCCAACGGTGAAATACGGAACACACGGGGTCCGATGAAACCA-GCAACAC 546 Query 37474 AGTCCCATCAGTC---ATC-TCTTTGTACTTAGCTTCGAAACTTACAGTGGCAAATGCGT 37529 | | | ||| || ||| ||| | ||| ||| |||||| || ||||||| Sbjct 545 GTTGGCCTGTGTCTGGGTCTTCTCGGTATTGAGCAGAGAAGTCTACAGTAGCGAATGCGT 486 Query 37530 TACCGTAATCAATATAATCATAGATTAGTTTACTGACCTCAGTGCGGAAATGACTCTCTC 37589 |||| || || |||||||| | | |||||| | ||| || ||||| || | ||| | Sbjct 485 TACCATAGTCGATATAATCTAACAACAGTTTAGACATCTCTGTACGGAAGTGGCCCTCAC 426 Query 37590 TGCACTTATTGCTCATGTAAGCCTGGATGGCCTTAGCTTTAGTCTTAGTGCTATCGCCTT 37649 || || ||||||| || | || || | ||| |||| |||| |||| | | Sbjct 425 GAGTTTTGTTCTTCATGTAGGCTTCAATAGCACGGGTTTTCTTCTTGGTGCCATCGTCCT 366 Query 37650 TACCATAACCTACCCAACGAAGCCAATCGTCATTAGGGAACAGAGATGAGAAATAGTTAG 37709 || ||| | ||||||| | ||| |||||||||||||| || | || || ||||| | Sbjct 365 TAGAATATGCCTCCCAACGCAACCAGTCGTCATTAGGGAAGAGGGCAGACAAGTAGTTGG 306 Query 37710 AGTGAAGGTTGTCCCTAATCTGACAAAGTTTAGGGAGGGTGGTAGAGTTCTTCCAAGGCA 37769 |||| |||||||| | || || ||||| |||||||| || ||||||||||||||||||| Sbjct 305 AGTGCAGGTTGTCTCGTATTTGGCAAAGCTTAGGGAGTGTTGTAGAGTTCTTCCAAGGCA 246 Query 37770 ACCCTTGGTTGGAAGTCGTAGTAGTGTCTGTTGCGAAAACATAGTTACGCAACTCTTTCC 37829 | ||||| | || || || ||||| || || || || |||||||| || || |||| Sbjct 245 ATGTCTGGTTAGCTGTGGTTGTGGTGTCAGTGGCAAAGACGTAGTTACGTAATTCCTTCC 186 Query 37830 ACTCTTCAATTTTCTGGCGTCGTTGATTATTAAAA 37864 |||||||||| || | || ||||| || |||||| Sbjct 185 ACTCTTCAATCTTTTCACGACGTTGGTTGTTAAAA 151 >seq141 Length=1247 Score = 127 bits (140), Expect = 6e-25 Identities = 267/389 (69%), Gaps = 13/389 (3%) Strand=Plus/Plus Query 16217 GCTGGGACAGGTAAGACATATGGTGCTATTGGTCGAGCTGTATCGTGGCTAGAAACTAAC 16276 ||||||||||| |||||||| || |||| || |||||| ||||| |||| || Sbjct 867 GCTGGGACAGGCAAGACATACGGAGCTACCGGGGCTGCTGTAGAATGGCTTAAAACGAAG 926 Query 16277 CGTA-AGAGCCGTGTAGTGATTGCTAGGCCTAACGTCTCTTTCGCTGATACTAACGGGTT 16335 | | | ||| | |||||| | | || || || || || ||||||| || ||||| Sbjct 927 GGCAGACAGCT-TATAGTGA---CACGTCCAAATGTATCCTTTGCTGATAAGAATGGGTT 982 Query 16336 TCTGCCTGGTACTGAGCGAGAGAAGTTGGAGCCTTGGATTAGGCCCCTGCAACAAAACTT 16395 ||| || || ||||| || |||||| ||| ||| ||| | |||||| | |||| | | | Sbjct 983 TCTCCCAGGCACTGAACGTGAGAAGATGGGGCCGTGGGTGAGGCCCATTGAACAGAGCCT 1042 Query 16396 TATCGAGCATGGTATTGGCATCCGACACCAAGAAGACCTTGAGAAAAACC---ACCGTCT 16452 ||||| | | || || ||| | || || || | | || || Sbjct 1043 GCGTTTACATGGCGTGCCTGTTGTGCAACAGGAAAGC--TGGGAGAAGCGTGGAACG-CT 1099 Query 16453 TCAATAC-TACATGCTTGAACATATTCAAGGGCTTACCTGGGATGACTCTCTCATCATTG 16511 ||||| | | | | |||||| | || || || ||||| | || || || ||||| | | Sbjct 1100 TCAATTCCTTCCT-CTTGAATACATACAGGGCCTTACATTCGACAACGCTTTCATCCTCG 1158 Query 16512 TAGATGAATGTCAGAACATGTCCTTCGAACAGATTAAAGTGTTGGTAACTCGTGTAGGTG 16571 | || ||||||||||||||| ||||||| || | || |||||| | || ||| |||| Sbjct 1159 TGGACGAATGTCAGAACATGACCTTCGAGCAATTGAAGGTGTTGCTCACACGTCAAGGTA 1218 Query 16572 AGTACAGCAAACTTGTATTGTGTGGGGAC 16600 |||||||||| || || |||||||||||| Sbjct 1219 AGTACAGCAAGCTGGTGTTGTGTGGGGAC 1247 >seq115 Length=1163 Score = 98.7 bits (108), Expect = 3e-16 Identities = 240/361 (66%), Gaps = 2/361 (1%) Strand=Plus/Minus Query 30399 GTAAATACCATCATCACCCCAATACATGAAACTGTTATCAACAACCACTACGGAGTTAGG 30458 ||| ||||| || ||||||||||| | | |||||||||| | ||||||| | | | Sbjct 408 GTATATACCGTCGTCACCCCAATATAGCACTGTGTTATCAACCAACACTACGCTGG-ACG 350 Query 30459 AGAAGAG-CAGCCATGCTCACTGATCTTAGTAACAAGGTAGTTGGTTGCAGTGAATCCAT 30517 || | || ||||| || || ||| |||| | |||||| || | || |||| Sbjct 349 AGCTTACACAACCATGTTCGCTATACTTCTTAACCAAGTAGTTTTCAGCGTTAAACCCAT 290 Query 30518 AGTCACTACCACCTTGGATCATCCATATGCCGTTAGCTGCCACTACCATTACAGCACTTC 30577 |||||||||||||||| || ||| | ||| || |||| | ||| || | || | Sbjct 289 AGTCACTACCACCTTGTATACCCCACACGCCATTCTCTGCTATTACTATAAGTTGGCTAC 230 Query 30578 CGACATTGACCAAATTGATAATGTCGTGGGCGCCTTCGATACGAATAAATCCGCCATCAG 30637 | || | |||| || ||||| ||| ||||| |||| || ||||| || || || | Sbjct 229 CAACGCTTACCATCTTCTTAATGCCGTATGCGCCATCGAGTCGGATAAAACCACCGTCTG 170 Query 30638 TATCTACTAGTTCTGGCTCTTCTGTACTGGTAGGATCACCATCTTGGTAGCAGTTCACAA 30697 | | |||| ||||| || | || || || |||||||| ||||| || | | Sbjct 169 TCGCAACTATATCTGGGGTGTCCTTCGACGTTGGGTCCCCATCTTGATAGCACTTGCCTA 110 Query 30698 TATCTGCTGGACTATCTACCAATTGGCTAAACAAAATGTAGGAAACAAGTCTAGGTGATT 30757 | || | | | || |||| | ||| ||||| ||||| || | ||| ||||||| Sbjct 109 TGTCGGTTATGTTGTCAACCAGCTTGCTGAACAAGATGTAAGAGGTCATTCTTGGTGATT 50 Query 30758 G 30758 | Sbjct 49 G 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158710166345230