Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq257 95.1 1e-14 seq5865 91.5 1e-13 >seq257 Length=13053552 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || ||||||||||||| | ||| | || Sbjct 5263135 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCT 5263076 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || || || | || || ||||| ||||| || | |||||||||||| Sbjct 5263075 TCCAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 5263016 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | |||||| | ||||||| || | ||||||||| Sbjct 5263015 TGGATTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 5262956 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| || || || || |||||||| || Sbjct 5262955 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTT 5262921 >seq5865 Length=143300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| || || |||||||| || || ||||||||||||| | Sbjct 26034 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 26093 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| || | || | || ||| ||||| || Sbjct 26094 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 26153 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | ||||||| | |||| Sbjct 26154 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTTGCCTCCA 26211 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCTT 16946 || | ||||||||| || || || || || || ||||| |||||||| || | |||| Sbjct 26212 CCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATCTTTCAACCTT 26271 Query 16947 A 16947 | Sbjct 26272 A 26272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| || || ||||||||||| || ||||||||||||| | Sbjct 25350 CCCCCTCTAAGGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 25409 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| || | || | || ||| ||||| || Sbjct 25410 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25469 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | ||||||| | |||| Sbjct 25470 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTTGCCTCCA 25527 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || || || || |||||||| Sbjct 25528 CCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| || || |||||||| || || ||||||||||||| | Sbjct 25578 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25637 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| || | || | || ||| ||||| || Sbjct 25638 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25697 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | ||||||| | |||| Sbjct 25698 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTTGCCTCCA 25755 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || || || || |||||||| Sbjct 25756 CCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| || || |||||||| || || ||||||||||||| | Sbjct 25806 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25865 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | || |||| || ||||| || | || | || ||| ||||| || Sbjct 25866 AGGGTTGGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25925 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | ||||||| | |||| Sbjct 25926 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTTGCCTCCA 25983 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || || || || |||||||| Sbjct 25984 CCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 26032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405053860575850